28 mai 2021

Yannick DE OLIVEIRA

Ingénieur d'Études, INRAE

Programming & framework, DBMS & NoSQL Technologies

yannick.de-oliveira@inrae.fr

01 69 33 23 76

Education and positions

BioInformatics engineer (2009-…), Java/Python-Django SHiNeMaS and BioMercator projects, INRA
Head of development (2007-2009), Java-J2EE/Python-Django development and customer support of a LIMS solution, Sibio
BioInformatics engineer (2004-2007), Java/Perl developer on FLAGdb++ and UTILLd, INRA
Master degree in BioInformatics (2004) « Etude de Génomes Outils Informatiques et Statistiques », Rouen.

I’m at head of two development projects in the team:

SHiNeMaS (Seeds History and network Management System), a database dedicated to seed lots history, phenotyping data and field practices,
BioMercato, a complete framework to integrate QTL, meta-QTL, genome annotation and genome-wide association studies.

I’m also involved in other development projects:

Thaliadb, A database dedicated to association genetic in plants,
Bakery, an ANR project focused on diversity and interactions in a low-input « Wheat/Human/Sourdough » agro-food ecosystem in which I develop a new database.

xx	yy
Programming & framework	Python – Django, Java – Spring & Hibernate, Perl – BioPerl - Javascript, Jquery, HTML
DBMS & NoSQL Technologies	PostgreSQL, Oracle, Mongodb

De Oliveira Y. , Burlot L., Dawson JC., Goldringer I., Madi D., Rivière P., Steinbach D., van Frank G., Thomas M.. (2020) SHiNeMaS: a web tool dedicated to seed lots history, phenotyping and cultural practices. Plant Methods, 1 (16) 98
Lopez Arias DC., Chastellier A., Thouroude T., Bradeen J., Van Eck L., De Oliveira Y. , Paillard S., Foucher F., Hibrand-Saint Oyant L., Soufflet-Freslon V.. (2020) Characterization of black spot resistance in diploid roses with QTL detection, meta-analysis and candidate-gene identification. Theor Appl Genet,