Olivier LANGELLA
Engineer, CNRS
olivier.langella@universite-paris-saclay.fr
+33 (0)1 69 33 23 68
- Génétique Quantitative et Évolution - Le Moulon
- Université Paris-Saclay, INRAE, CNRS, AgroParisTech
- Ferme du Moulon
- F-91190 Gif-sur-Yvette
Position and Education
- CNRS research engineer, GQE-Le Moulon (Gif-sur-Yvette, France), 2004-present
- CNRS engineer, EGCE (Gif-sur-Yvette, France), 1996-2003
- Bioinformatics post graduate degree (Université Pierre et Marie Curie, Paris VI), 1995
Research interests
I am interested in computational challenges raised by highthroughtput proteomics studies (data storage and intensive calculation). In charge of the bioinformatics developments of the PAPPSO team, I thus lead several projects :
- MassChroQ (Valot et al. 2011), mass spectrometry based quantification software
- X!TandemPipeline (Langella et al. 2017), for protein inference
- PROTICdb (Langella et al. 2013), proteomic database to store, publish and query proteomics data
We have developped a complete solution using free softwares and common hardware to store 10Tbytes per year and offering high speed connection to an HPC cluster (based on ceph and HTCondor).
I am also involved in the GQE Bioinformatics facility (ABI), in which I lead the ABI-SYS group (system).
Publications
- Bassignani A., Plancade S., Berland M., Blein-Nicolas M., Guillot A., Chevret D., Moritz C., Huet S., Rizkalla S., Clément K., Doré J., Langella O. , Juste C.. (2021) Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets. J. Proteome Res.,
- Adenot P., Bansard S., Benaben D., Brunaud V., Caron C., Dehne Garcia A., Duperier C., Falce A., Filangi O., Giacomoni F., Granier F., Grevet P., Guilhot N., Hofstetter A., Joets J., Hotelier T., Langella O. , Legrand L., LOAEC M., Lollier V., Moreau P., Morin E., Quesneville H., Rabemanantsoa T., Salin G., Tessier D.. (2018) AgroDataRing: Une infrastructure partagée et mutualisée pour le stockage longue durée. Cahier des Techniques de l'INRA, 1-7
- Langella O. , Valot B., Balliau T., Blein-Nicolas M., Bonhomme L., Zivy M.. (2017) X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification. J. Proteome Res., 2 (16) 494-503
- Dobrenel T., Mancera-Martínez E., Forzani C., Azzopardi M., Davanture M., Moreau M., Schepetilnikov M., Chicher J., Langella O. , Zivy M., Robaglia C., Ryabova LA., Hanson J., Meyer C.. (2016) The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6. Front Plant Sci, (7)
- Sabarly V., Aubron C., Glodt J., Balliau T., Langella O. , Chevret D., Rigal O., Bourgais A., Picard B., de Vienne D., Denamur E., Bouvet O., Dillmann C.. (2016) Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates. Environmental microbiology, 1 (18) 100-17
- Chaze T., Guillot A., Valot B., Langella O. , Chamot-Rooke J., Di Guilmi AM., Trieu-Cuot P., Dramsi S., Mistou MY.. (2014) O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry. Molecular & cellular proteomics : MCP, 9 (13) 2168-82
- Albertin W., Marullo P., Bely M., Aigle M., Bourgais A., Langella O. , Balliau T., Chevret D., Valot B., da Silva T., Dillmann C., de Vienne D., Sicard D.. (2013) Linking post-translational modifications and variation of phenotypic traits. Molecular & cellular proteomics : MCP, 3 (12) 720-35
- Langella O. , Valot B., Jacob D., Balliau T., Flores R., Hoogland C., Joets J., Zivy M.. (2013) Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction. Proteomics, 9 (13) 1457-66
- Valot B., Langella O. , Nano E., Zivy M.. (2011) MassChroQ: a versatile tool for mass spectrometry quantification. Proteomics, 17 (11) 3572-7
- Albertin W., Langella O. , Joets J., Negroni L., Zivy M., Damerval C., Thiellement H.. (2009) Comparative proteomics of leaf, stem, and root tissues of synthetic Brassica napus. Proteomics, 3 (9) 793-9
- Langella O. , Zivy M.. (2008) A method based on bead flows for spot detection on 2-D gel images. Proteomics, 23-24 (8) 4914-8