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Génétique Quantitative et Évolution - Le Moulon

PAPPSO - Proteomics analysis facility in the south-west of Paris

The PAPPSO facility carries out proteomics analyses within the framework of services and collaborations.


PAPPSO is composed of two sites:

  • at Gif-sur-Yvette in the UMR Génétique Quantitative et Évolution – Le Moulon, the team is specialized in plant biologyy ;
  • at Jouy-en-Josas in the UMR Micalis the team is specialized in prokariotes.

PAPPSO performs identification and quantification of protein amounts and of post-translational modifications. PAPPSO has developed an expertise in the performance of large experiments (several hundred samples) as well as in peptidomics and metaproteomics. For example, at present, a GWAS experiment on maize proteome involves more than a thousand samples, and a metaproteomics analysis of the intestinal microbiota involves several hundred samples.


In parallel with developments in mass spectrometry, PAPPSO is developing proteomic analysis tools adapted to large numbers and highly complex samples. These tools enable control of the entire processing chain from peptide identification to protein quantification and statistical analysis of their variation. The platform is equipped with an IT infrastructure that allows it to manage this very large amount of data. PAPPSO disseminates the tools it develops in open source, organizes training and supports users in the exploitation of their results, in particular up to their bioinformatics and statistical analysis.

Main bioinformatics tools developed by PAPPSO PAPPSO :

  • mineXpert2 (1) to visualize and explore MSⁿ mass spectrometric data.
  • X!TandemPipeline (2) pour l’identification et l’inférence des protéines,
  • MassChroQ (3) pour la quantification des peptides,
  • The ProticDB database (4),
  • the MCQR R package dedicated to the statistical analysis of MS proteomic data.


PAPPSO is equipped with different mass spectrometers adapted to different levels of complexity of the protein mixture: an LTQ, an LTQ-Orbitrap, a Q-Exactive plus, an Orbitrap Fusion Lumos and a timsTOF.

Labels and certification

PAPPSO has been labelled by IBiSA since 2009. It has been regularly labelled by INRA’s CNOC as INRA Strategic Platform (2009-2013), National Strategic Platform (2013-2018) and finally ISC (2018). PAPPSO has been ISO9001 certified since 2017.

PAPPSO is attached to the LabEx SPS, Sciences des Plantes de Saclay.


Former members

Michel Zivy Directeur de Recherche (1985-2022), Luciana De Oliveira Postdoc (2020-2021), Thomas Renne Bioinformatics trainee (2019-2021), Benoît Valot Engineer (2006-2014)


  • Blein-Nicolas M. , Devijver E., Gallopin M., Perthame E.. (2024) Nonlinear network-based quantitative trait prediction from biological data. Journal of the Royal Statistical Society Series C: Applied Statistics, qlae012
  • Tarkowski Łukasz P., Clochard T., Blein-Nicolas M. , Zivy M., Baillau T., Abadie C., Morère-Le Paven MC., Limami AM., Tcherkez G., Montrichard F.. (2024) The nitrate transporter-sensor MtNPF6.8 regulates the branched chain amino acid/pantothenate metabolic pathway in barrel medic (Medicago truncatula Gaertn.) root tip. Plant Physiology and Biochemistry, (206) 108213
  • Chasseriaud L., Albertin W., Blein-Nicolas M. , Balliau T. , Zivy M., Coulon J., Bely M.. (2023) Physical Contact between Torulaspora delbrueckii and Saccharomyces cerevisiae Alters Cell Growth and Molecular Interactions in Grape Must. Beverages, 3 (9) 81
  • Jamet E., Esquerré-Tugayé MT., Gallardo-Guerrero K., Rolland N., Zivy M., Blein-Nicolas M. , Vincent D., Gontero B., Rajjou L.. (2023) Obituary: Dominique Job (1947-2022). Front. Plant Sci., (14) 1188766
  • Prunier G., Cherkaoui M., Lysiak A., Langella O. , Blein-Nicolas M. , Lollier V., Benoist E., Jean G., Fertin G., Rogniaux H., Tessier D.. (2023) Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides. BMC Bioinformatics, 1 (24) 421
  • Andrieu, Marie-Hélène ., Atienza, Isabelle ., Marmagne, Anne ., Just, Daniel ., Bienvenut, Willy Vincent ., Gibon, Yves ., Colombié, Sophie .. (2024) Protocole de marquage à l’azote 15N de fruits de tomate issus de plantes cultivées en condition standard. NOV'AE, 5 (2022) 1-11
  • Atze H., Liang Y., Hugonnet JE., Gutierrez A., Rusconi F. , Arthur M.. (2022) Heavy isotope labeling and mass spectrometry reveal unexpected remodeling of bacterial cell wall expansion in response to drugs. eLife, (11) e72863
  • Baudouin E., Puyaubert J., Meimoun P., Blein-Nicolas M. , Davanture M. , Zivy M., Bailly C.. (2022) Dynamics of Protein Phosphorylation during Arabidopsis Seed Germination. International Journal of Molecular Sciences, 13 (23) 7059
  • Guillou MC., Balliau T. , Vergne E., Canut H., Chourré J., Herrera-León C., Ramos-Martín F., Ahmadi-Afzadi M., D'Amelio N., Ruelland E., Zivy M., Renou JP., Jamet E., Aubourg S.. (2022) The PROSCOOP10 Gene Encodes Two Extracellular Hydroxylated Peptides and Impacts Flowering Time in Arabidopsis. Plants (Basel), 24 (11) 3554
  • Henry C., Bassignani A., Berland M., Langella O. , Sokol H., Juste C.. (2022) Modern Metaproteomics: A Unique Tool to Characterize the Active Microbiome in Health and Diseases, and Pave the Road towards New Biomarkers—Example of Crohn’s Disease and Ulcerative Colitis Flare-Ups. Cells, 8 (11) 1340
  • Jean N., Perié L., Dumont E., Bertheau L., Balliau T. , Caruana AMN., Amzil Z., Laabir M., Masseret E.. (2022) Metal stresses modify soluble proteomes and toxin profiles in two Mediterranean strains of the distributed dinoflagellate Alexandrium pacificum. Sci Total Environ, (818) 151680
  • Kalemba EM., Valot B., Job D., Bailly C., Meimoun P.. (2022) Are Methionine Sulfoxide-Containing Proteins Related to Seed Longevity? A Case Study of Arabidopsis thaliana Dry Mature Seeds Using Cyanogen Bromide Attack and Two-Dimensional-Diagonal Electrophoresis. Plants, 4 (11) 569
  • Millán-Oropeza A., Blein-Nicolas M. , Monnet V., Zivy M., Henry C.. (2022) Comparison of Different Label-Free Techniques for the Semi-Absolute Quantification of Protein Abundance. Proteomes, 1 (10) 2
  • Plancade S., Berland M., Blein-Nicolas M. , Langella O. , Bassignani A., Juste C.. (2022) A combined test for feature selection on sparse metaproteomics data—an alternative to missing value imputation. PeerJ, (10) e13525
  • Sano N., Lounifi I., Cueff G., Collet B., Clément G., Balzergue S., Huguet S., Valot B., Galland M., Rajjou L.. (2022) Multi-Omics Approaches Unravel Specific Features of Embryo and Endosperm in Rice Seed Germination. Front. Plant Sci., (13) 867263
  • Wang X., Davanture M. , Zivy M., Bailly C., Nambara E., Corbineau F.. (2022) Label-Free Quantitative Proteomics Reveal the Involvement of PRT6 in Arabidopsis thaliana Seed Responsiveness to Ethylene. International Journal of Molecular Sciences, 16 (23) 9352
  • Yip Delormel T., Avila-Ospina L., Davanture M. , Zivy M., Lang J., Valentin N., Rayapuram N., Hirt H., Colcombet J., Boudsocq M.. (2022) In vivo identification of putative CPK5 substrates in Arabidopsis thaliana. Plant Science, (314) 111121
  • Zang L., Tarkowski LP., Morère-Le Paven MC., Zivy M., Balliau T. , Clochard T., Bahut M., Balzergue S., Pelletier S., Landès C., Limami AM., Montrichard F.. (2022) The Nitrate Transporter MtNPF6.8 Is a Master Sensor of Nitrate Signal in the Primary Root Tip of Medicago truncatula. Front Plant Sci, (13) 832246
  • Balliau T. , Duruflé H., Blanchet N., Blein-Nicolas M. , Langlade NB., Zivy M.. (2021) Proteomic data from leaves of twenty-four sunflower genotypes under water deficit. OCL, (28) 12
  • Bassignani A., Plancade S., Berland M., Blein-Nicolas M. , Guillot A., Chevret D., Moritz C., Huet S., Rizkalla S., Clément K., Doré J., Langella O. , Juste C.. (2021) Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets. J. Proteome Res.,
  • Ben Salah E., Barrera C., Sakly W., Mosbahi S., Balliau T. , Franche N., Gottstein B., Ben Youssef S., Mekki M., Babba H., Millon L.. (2021) Novel biomarkers for the early prediction of pediatric cystic echinococcosis post-surgical outcomes. J Infect, S0163-4453(21)00494-1
  • Cui J., Davanture M. , Lamade E., Zivy M., Tcherkez G.. (2021) Plant low-K responses are partly due to Ca prevalence and the low-K biomarker putrescine does not protect from Ca side effects but acts as a metabolic regulator. Plant Cell Environ, 5 (44) 1565-1579
  • Douché T., Valot B., Balliau T. , San Clemente H., Zivy M., Jamet E.. (2021) Cell wall proteomic datasets of stems and leaves of Brachypodium distachyon. Data in Brief, (35) 106818
  • Duminil P., Davanture M. , Oury C., Boex‐Fontvieille E., Tcherkez G., Zivy M., Hodges M., Glab N.. (2021) Arabidopsis thaliana 2,3‐bisphosphoglycerate‐independent phosphoglycerate mutase 2 activity requires serine 82 phosphorylation. Plant J, 5 (107) 1478-1489
  • Henriet C., Balliau T. , Aimé D., Le Signor C., Kreplak J., Zivy M., Gallardo K., Vernoud V.. (2021) Proteomics of developing pea seeds reveals a complex antioxidant network underlying the response to sulfur deficiency and water stress. Journal of Experimental Botany, eraa571
  • Kolkas H., Balliau T. , Chourré J., Zivy M., Canut H., Jamet E.. (2021) The Cell Wall Proteome of Marchantia polymorpha Reveals Specificities Compared to Those of Flowering Plants. Front Plant Sci, (12) 765846
  • Langella O. , Rusconi F. . (2021) mineXpert2 : Full-Depth Visualization and Exploration of MS n Mass Spectrometry Data. J. Am. Soc. Mass Spectrom., 4 (32) 1138-1141
  • Nicoud Q., Lamouche F., Chaumeret A., Balliau T. , Le Bars R., Bourge M., Pierre F., Guérard F., Sallet E., Tuffigo S., Pierre O., Dessaux Y., Gilard F., Gakière B., Nagy I., Kereszt A., Zivy M., Mergaert P., Gourion B., Alunni B., Heck M., Griffitts J.. (2021) Bradyrhizobium diazoefficiens USDA110 Nodulation of Aeschynomene afraspera Is Associated with Atypical Terminal Bacteroid Differentiation and Suboptimal Symbiotic Efficiency. mSystems, 3 (6) e01237-20
  • Plancade S., Berland M., Blein-Nicolas M. , Langella O. , Bassignani A., Juste C.. (2021) A combined test for feature selection on sparse metaproteomics data - alternative to missing value imputation. bioRxiv, 2021.06.22.449387
  • Recorbet G., Calabrese S., Balliau T. , Zivy M., Wipf D., Boller T., Courty PE.. (2021) Proteome adaptations under contrasting soil phosphate regimes of Rhizophagus irregularis engaged in a common mycorrhizal network. Fungal Genetics and Biology, (147) 103517
  • Rusconi F. . (2021) Free Open Source Software for Protein and Peptide Mass Spectrometry- based Science. CPPS, 2 (22) 134-147
  • Urrutia M., Blein-Nicolas M. , Prigent S., Bernillon S., Deborde C., Balliau T. , Maucourt M., Jacob D., Ballias P., Bénard C., Sellier H., Gibon Y., Giauffret C., Zivy M., Moing A.. (2021) Maize metabolome and proteome responses to controlled cold stress partly mimic early-sowing effects in the field and differ from those of Arabidopsis. Plant Cell Environ,
  • Van Den Bossche T., Kunath BJ., Schallert K., Schäpe SS., Abraham PE., Armengaud J., Arntzen M., Bassignani A., Benndorf D., Fuchs S., Giannone RJ., Griffin TJ., Hagen LH., Halder R., Henry C., Hettich RL., Heyer R., Jagtap P., Jehmlich N., Jensen M., Juste C., Kleiner M., Langella O. , Lehmann T., Leith E., May P., Mesuere B., Miotello G., Peters SL., Pible O., Queiros PT., Reichl U., Renard BY., Schiebenhoefer H., Sczyrba A., Tanca A., Trappe K., Trezzi JP., Uzzau S., Verschaffelt P., Von Bergen M., Wilmes P., Wolf M., Martens L., Muth T.. (2021) Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. Nat Commun, 1 (12) 7305
  • Belouah I., Bénard C., Denton A., Blein-Nicolas M. , Balliau T. , Teyssier E., Gallusci P., Bouchez O., Usadel B., Zivy M., Gibon Y., Colombié S.. (2020) Transcriptomic and proteomic data in developing tomato fruit. Data in Brief, (28) 105015
  • Blein-Nicolas M. , Negro SS., Balliau T. , Welcker C., Cabrera-Bosquet L., Nicolas SD., Charcosset A., Zivy M.. (2020) A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize. Genome Res., 11 (30) 1593-1604
  • Chetouhi C., Masseret E., Satta CT., Balliau T. , Laabir M., Jean N.. (2020) Intraspecific variability in membrane proteome, cell growth, and morphometry of the invasive marine neurotoxic dinoflagellate Alexandrium pacificum grown in metal-contaminated conditions. Science of The Total Environment, (715) 136834
  • Kilani J., Davanture M. , Simon A., Zivy M., Fillinger S.. (2020) Comparative quantitative proteomics of osmotic signal transduction mutants in Botrytis cinerea explain mutant phenotypes and highlight interaction with cAMP and Ca2+ signalling pathways. Journal of Proteomics, (212) 103580
  • Luo J., Havé M., Clément G., Tellier F., Balliau T. , Launay-Avon A., Guérard F., Zivy M., Masclaux-Daubresse C.. (2020) Integrating multiple omics to dissect the common and specific molecular changes occurring in Arabidopsis thaliana (L.) under nitrate and sulfate chronic limitations. Journal of Experimental Botany, eraa337
  • Saux M., Ponnaiah M., Langlade N., Zanchetta C., Balliau T. , El‐Maarouf‐Bouteau H., Bailly C.. (2020) A multiscale approach reveals regulatory players of water stress responses in seeds during germination. Plant Cell Environ, 5 (43) 1300-1313
  • Tcherkez G., Carroll A., Abadie C., Mainguet S., Davanture M. , Zivy M.. (2020) Protein synthesis increases with photosynthesis via the stimulation of translation initiation. Plant Science, (291) 110352
  • Bancel E., Bonnot T., Davanture M. , Alvarez D., Zivy M., Martre P., Déjean S., Ravel C.. (2019) Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition. Front. Plant Sci., (10) 832
  • Belouah I., Nazaret C., Pétriacq P., Prigent S., Bénard C., Mengin V., Blein-Nicolas M. , Denton AK., Balliau T. , Augé S., Bouchez O., Mazat JP., Stitt M., Usadel B., Zivy M., Beauvoit B., Gibon Y., Colombié S.. (2019) Modeling Protein Destiny in Developing Fruit. Plant Physiology, 3 (180) 1709-1724
  • Belouah I., Blein-Nicolas M. , Balliau T. , Gibon Y., Zivy M., Colombié S.. (2019) Peptide filtering differently affects the performances of XIC-based quantification methods. J Proteomics, (193) 131-141
  • Bienvenut W. V. , 2 décembre 2019, Des débuts de la protéomique à l'acétylation N-terminale des protéines chez les plantes, HDR, Université Paris Saclay
  • Chauffour F., Bailly M., Perreau F., Cueff G., Suzuki H., Collet B., Frey A., Clément G., Soubigou-Taconnat L., Balliau T. , Krieger-Liszkay A., Rajjou L., Marion-Poll A.. (2019) Multi-omics Analysis Reveals Sequential Roles for ABA during Seed Maturation. Plant Physiol., 2 (180) 1198-1218
  • Cui J., Davanture M. , Zivy M., Lamade E., Tcherkez G.. (2019) Metabolic responses to potassium availability and waterlogging reshape respiration and carbon use efficiency in oil palm. New Phytologist, 1 (223) 310-322
  • Duruflé H., Ranocha P., Balliau T. , Dunand C., Jamet E.. (2019) Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at optimal or sub-optimal temperature. Data in Brief, (27) 104581
  • Havé M., Luo J., Tellier F., Balliau T. , Cueff G., Chardon F., Zivy M., Rajjou L., Cacas JL., Masclaux‐Daubresse C.. (2019) Proteomic and lipidomic analyses of the Arabidopsis atg5 autophagy mutant reveal major changes in ER and peroxisome metabolisms and in lipid composition. New Phytol, 3 (223) 1461-1477
  • Henry C., Haller L., Blein-Nicolas M. , Zivy M., Canette A., Verbrugghe M., Mézange C., Boulay M., Gardan R., Samson S., Martin V., André-Leroux G., Monnet V.. (2019) Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome. Front. Microbiol., (10) 1329
  • Rusconi F. . (2019) mineXpert: Biological Mass Spectrometry Data Visualization and Mining with Full JavaScript Ability. J. Proteome Res., 5 (18) 2254-2259
  • Aloui A., Recorbet G., Lemaître-Guillier C., Mounier A., Balliau T. , Zivy M., Wipf D., Dumas-Gaudot E.. (2018) The plasma membrane proteome of Medicago truncatula roots as modified by arbuscular mycorrhizal symbiosis. Mycorrhiza, 1 (28) 1-16
  • Balliau T. , Blein-Nicolas M. , Zivy M.. (2018) Evaluation of Optimized Tube-Gel Methods of Sample Preparation for Large-Scale Plant Proteomics. Proteomes, 1 (6) 6
  • Berrabah F., Balliau T. , Ait-Salem EH., George J., Zivy M., Ratet P., Gourion B.. (2018) Control of the ethylene signaling pathway prevents plant defenses during intracellular accommodation of the rhizobia. The New phytologist, 1 (219) 310-323
  • Bichang'a G., Da Lage JL., Capdevielle-Dulac C., Zivy M., Balliau T. , Sambai K., Le Ru B., Kaiser L., Juma G., Maina ENM., Calatayud PA.. (2018) alpha-Amylase Mediates Host Acceptance in the Braconid Parasitoid Cotesia flavipes. J Chem Ecol, 11 (44) 1030-1039
  • Havé M., Balliau T. , Cottyn-Boitte B., Dérond E., Cueff G., Soulay F., Lornac A., Reichman P., Dissmeyer N., Avice JC., Gallois P., Rajjou L., Zivy M., Masclaux-Daubresse C.. (2018) Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?. J Exp Bot, 6 (69) 1369-1385
  • Bonnot T., Bancel E., Alvarez D., Davanture M. , Boudet J., Pailloux M., Zivy M., Ravel C., Martre P.. (2017) Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum. The Plant Journal, 5 (91) 894-910
  • Duruflé H., Hervé V., Ranocha P., Balliau T. , Zivy M., Chourré J., San Clemente H., Burlat V., Albenne C., Déjean S., Jamet E., Dunand C.. (2017) Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study. Plant Science, (263) 183-193
  • Duruflé H., Clemente HS., Balliau T. , Zivy M., Dunand C., Jamet E.. (2017) Cell wall proteome analysis of Arabidopsis thaliana mature stems. PROTEOMICS, 8 (17) 1600449
  • Duruflé H., Hervé V., Balliau T. , Zivy M., Dunand C., Jamet E.. (2017) Proline Hydroxylation in Cell Wall Proteins: Is It Yet Possible to Define Rules?. Front. Plant Sci., (8)
  • Galland M., He D., Lounifi I., Arc E., Clément G., Balzergue S., Huguet S., Cueff G., Godin B., Collet B., Granier F., Morin H., Tran J., Valot B., Rajjou L.. (2017) An Integrated “Multi-Omics” Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality. Front Plant Sci, (8)
  • Jean N., Dumont E., Herzi F., Balliau T. , Laabir M., Masseret E., Mounier S.. (2017) Modifications of the soluble proteome of a mediterranean strain of the invasive neurotoxic dinoflagellate Alexandrium catenella under metal stress conditions. Aquatic Toxicology, (188) 80-91
  • Langella O. , Valot B., Balliau T. , Blein-Nicolas M. , Bonhomme L., Zivy M.. (2017) X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification. J. Proteome Res., 2 (16) 494-503
  • Millan-Oropeza A., Henry C., Blein-Nicolas M. , Aubert-Frambourg A., Moussa F., Bleton J., Virolle MJ.. (2017) Quantitative Proteomics Analysis Confirmed Oxidative Metabolism Predominates in Streptomyces coelicolor versus Glycolytic Metabolism in Streptomyces lividans. J. Proteome Res., 7 (16) 2597-2613
  • Negroni L., Zivy M., Lemaire C., Lacapere JJ.. (2017) Mass Spectrometry of Mitochondrial Membrane Protein Complexes. Springer Link, 233-246
  • Regente M., Pinedo M., San Clemente H., Balliau T. , Jamet E., de la Canal L.. (2017) Plant extracellular vesicles are incorporated by a fungal pathogen and inhibit its growth. J Exp Bot, 20 (68) 5485-5495
  • Renvoisé M., Bonhomme L., Davanture M. , Zivy M., Lemaire C., Tan AC., Huang PH.. (2017) Phosphoproteomic Analysis of Isolated Mitochondria in Yeast. Springer Link, 283-299
  • Rouzet A., Reboux G., Dalphin JC., Gondouin A., De Vuyst P., Balliau T. , Millon L., Valot B., Roussel S.. (2017) An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung. Journal of Immunological Methods, (450) 58-65
  • Villegente M., Marmey P., Job C., Galland M., Cueff G., Godin B., Rajjou L., Balliau T. , Zivy M., Fogliani B., Sarramegna-Burtet V., Job D.. (2017) A Combination of Histological, Physiological, and Proteomic Approaches Shed Light on Seed Desiccation Tolerance of the Basal Angiosperm Amborella trichopoda. Proteomes, 3 (5)
  • Blein-Nicolas M. , Zivy M.. (2016) Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 8 (1864) 883-895
  • Dobrenel T., Mancera-Martínez E., Forzani C., Azzopardi M., Davanture M. , Moreau M., Schepetilnikov M., Chicher J., Langella O. , Zivy M., Robaglia C., Ryabova LA., Hanson J., Meyer C.. (2016) The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6. Front Plant Sci, (7)
  • Herve V., Durufle H., San Clemente H., Albenne C., Balliau T. , Zivy M., Dunand C., Jamet E.. (2016) An enlarged cell wall proteome of Arabidopsis thaliana rosettes. Proteomics, 24 (16) 3183-3187
  • Sabarly V., Aubron C., Glodt J., Balliau T. , Langella O. , Chevret D., Rigal O., Bourgais A., Picard B., de Vienne D., Denamur E., Bouvet O., Dillmann C.. (2016) Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates. Environmental microbiology, 1 (18) 100-17
  • Blein-Nicolas M. , Albertin W., da Silva T., Valot B., Balliau T. , Masneuf-Pomarède I., Bely M., Marullo P., Sicard D., Dillmann C., de Vienne D., Zivy M.. (2015) A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast. Mol. Cell Proteomics, 8 (14) 2056-2071
  • Albertin W., Marullo P., Bely M., Aigle M., Bourgais A., Langella O. , Balliau T. , Chevret D., Valot B., da Silva T., Dillmann C., de Vienne D., Sicard D.. (2013) Linking post-translational modifications and variation of phenotypic traits. Molecular & cellular proteomics : MCP, 3 (12) 720-35
  • Blein-Nicolas M. , Albertin W., Valot B., Marullo P., Sicard D., Giraud C., Huet S., Bourgais A., Dillmann C., de Vienne D., Zivy M.. (2013) Yeast proteome variations reveal different adaptive responses to grape must fermentation. Molecular biology and evolution, 6 (30) 1368-83
  • Langella O. , Valot B., Jacob D., Balliau T. , Flores R., Hoogland C., Joets J., Zivy M.. (2013) Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction. Proteomics, 9 (13) 1457-66
  • Blein-Nicolas M. , Xu H., de Vienne D., Giraud C., Huet S., Zivy M.. (2012) Including shared peptides for estimating protein abundances: a significant improvement for quantitative proteomics. Proteomics, 18 (12) 2797-801
  • Valot B., Langella O. , Nano E., Zivy M.. (2011) MassChroQ: a versatile tool for mass spectrometry quantification. Proteomics, 17 (11) 3572-7
  • Virlouvet L., Jacquemot MP., Gerentes D., Corti H., Bouton S., Gilard F., Valot B., Trouverie J., Tcherkez G., Falque M., Damerval C., Rogowsky P., Perez P., Noctor G., Zivy M., Coursol S.. (2011) The ZmASR1 protein influences branched-chain amino acid biosynthesis and maintains kernel yield in maize under water-limited conditions. Plant physiology, 2 (157) 917-36