Pierre MONTALENT
Engineer, INRAE
Looking for tools that can help scientists at GQE to analyze their data
- NGS analysis,
- Galaxy
pierre.montalent@inrae.fr
+33 (0)1 69 33 23 76
- Génétique Quantitative et Évolution - Le Moulon
- Université Paris-Saclay, INRAE, CNRS, AgroParisTech
- IDEEV
- 12 route 128
- 91190 Gif-sur-Yvette
-
Teams :
- ABI
Education and positions
- Since 2005 - Software development engineer in bioinformatics/Ingénieur d’études (INRA) at UMR GQE - Le Moulon, Gif-sur-Yvette, France,
- 2004-2005 (9 months) – Bioinformatics Engineer at Institut Pasteur in Proteomics Platform, Paris, France,
- 2004 Master degree in bioinformatics / DESS EGOISt, Rouen, France.
Work of interest
- NGS analysis (sequences comparisons, SNP mapping/filtering), or for Genome wide association studies, or others according to user needs,
- Tools installation and tools integration in Galaxy to make them available to users.
Skills
- Software development in Perl language,
- Software development in Python language (learning in progress),
- Linux environment.
Current projects
- Responsible of Galaxy, a Bioinformatics software environment for data analysis installed locally at QGE and of analysis tools deployment in Galaxy,
- Tools installation and development linked to software deployment in Galaxy software, in response to UMR scientific needs.
Main previous project
- Database designer and web interface developer for the “French cultivated Wheat”, in collaboration with DEAP QGE-Le Moulon team,
- Bioanalysis of Yeast NGS data for adaptative diversity of S. cerevisiae in collaboration with D. Sicard.
Publications
- Urien C., Legrand J., Montalent P. , Casaregola S., Sicard D.. (2019) Fungal Species Diversity in French Bread Sourdoughs Made of Organic Wheat Flour. Front. Microbiol., (10) 201
- Perronne R., Makowski D., Goffaux R., Montalent P. , Goldringer I.. (2017) Temporal evolution of varietal, spatial and genetic diversity of bread wheat between 1980 and 2006 strongly depends upon agricultural regions in France. Agriculture, Ecosystems & Environment, (236) 12-20
- Ressayre A., Glemin S., Montalent P. , Serre-Giardi L., Dillmann C., Joets J.. (2015) Introns Structure Patterns of Variation in Nucleotide Composition in Arabidopsis thaliana and Rice Protein-Coding Genes. Genome biology and evolution, 10 (7) 2913-28
- Ganal MW., Durstewitz G., Polley A., Bérard A., Buckler ES., Charcosset A., Clarke JD., Graner EM., Hansen M., Joets J., Le Paslier MC., McMullen MD., Montalent P. , Rose M., Schön CC., Sun Q., Walter H., Martin OC., Falque M., Lukens L.. (2011) A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome. PLoS ONE, 12 (6) e28334
- Wang S., Spor A., Nidelet T., Montalent P. , Dillmann C., de Vienne D., Sicard D.. (2011) Switch between life history strategies due to changes in glycolytic enzyme gene dosage in Saccharomyces cerevisiae. Applied and environmental microbiology, 2 (77) 452-9