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Génétique Quantitative et Évolution - Le Moulon

ABI - Bioinformatics and Informatics

The activities of ABI are:

  • the analysis of genomes sequencing data,
  • the development of software and databases for genetics,
  • IT: systems administration and network.
portraits des membres de l'équipe

portraits des membres de l'équipe

The team Bioinformatics and Informatics includes 3 groups:


ABI is attached to the LabEx BASC, Biodiversité, Agroécosystèmes, Société, Climat.

Publications

De Oliveira Y, Burlot L, Dawson JC, Goldringer I, Madi D, Rivière P, Steinbach D, van Frank G, Thomas M. (2020) SHiNeMaS: a web tool dedicated to seed lots history, phenotyping and cultural practices. Plant Methods, 1 (16) 98
Lopez Arias DC, Chastellier A, Thouroude T, Bradeen J, Van Eck L, De Oliveira Y, Paillard S, Foucher F, Hibrand-Saint Oyant L, Soufflet-Freslon V. (2020) Characterization of black spot resistance in diploid roses with QTL detection, meta-analysis and candidate-gene identification. Theor Appl Genet,
Damerval C, Citerne H, Conde E Silva N, Deveaux Y, Delannoy E, Joets J, Simonnet F, Staedler Y, Schönenberger J, Yansouni J, Le Guilloux M, Sauquet H, Nadot S. (2019) Unraveling the Developmental and Genetic Mechanisms Underpinning Floral Architecture in Proteaceae. Front Plant Sci, (10) 18
Mabire C, Duarte J, Darracq A, Pirani A, Rimbert H, Madur D, Combes V, Vitte C, Praud S, Rivière N, Joets J, Pichon JP, Nicolas SD. (2019) High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array. BMC Genomics, 1 (20) 848
Urien C, Legrand J, Montalent P, Casaregola S, Sicard D. (2019) Fungal Species Diversity in French Bread Sourdoughs Made of Organic Wheat Flour. Front. Microbiol., (10) 201
Richard MMS, Gratias A, Thareau V, Kim KD, Balzergue S, Joets J, Jackson SA, Geffroy V. (2018) Genomic and epigenomic immunity in common bean: the unusual features of NB-LRR gene family. DNA Res, 2 (25) 161-172
Wang S, Spor A, Nidelet T, Montalent P, Dillmann C, de Vienne D, Sicard D. (2011) Switch between life history strategies due to changes in glycolytic enzyme gene dosage in Saccharomyces cerevisiae. Applied and environmental microbiology, 2 (77) 452-9