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Genome editing in the yeast Nakaseomyces delphensis and description of its complete sexual cycle.Yeast, yea.3522
de Vienne D., Fiévet J..
(2020)
The Pitfalls of Heterosis Coefficients.Plants, 7 (9) 875
van Frank G., Rivière P., Pin S., Baltassat R., Berthellot JF., Caizergues F., Dalmasso C., Gascuel JS., Hyacinthe A., Mercier F., Montaz H., Ronot B., Goldringer I..
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Genetic Diversity and Stability of Performance of Wheat Population Varieties Developed by Participatory Breeding.Sustainability, 1 (12) 384
2019
Aguirre‐Liguori JA., Gaut BS., Jaramillo‐Correa JP., Tenaillon M., Montes‐Hernández S., García‐Oliva F., Hearne SJ., Eguiarte LE..
(2019)
Divergence with gene flow is driven by local adaptation to temperature and soil phosphorus concentration in teosinte subspecies (Zea mays parviglumis and Zea mays mexicana ).Mol Ecol, 11 (28) 2814-2830
Allier A., Teyssèdre S., Lehermeier C., Claustres B., Maltese S., Melkior S., Moreau L., Charcosset A..
(2019)
Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a North European grain maize program.Theor Appl Genet, 5 (132) 1321-1334
Allier A., Lehermeier C., Charcosset A., Moreau L., Teyssèdre S..
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Improving Short- and Long-Term Genetic Gain by Accounting for Within-Family Variance in Optimal Cross-Selection.Front. Genet., (10) 1006
Allier A., Moreau L., Charcosset A., Teyssèdre S., Lehermeier C..
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Usefulness Criterion and Post-selection Parental Contributions in Multi-parental Crosses: Application to Polygenic Trait Introgression.G3: Genes, Genomes, Genetics, 5 (9) 1469-1479
Bancel E., Bonnot T., Davanture M., Alvarez D., Zivy M., Martre P., Déjean S., Ravel C..
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Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition.Front. Plant Sci., (10) 832
Belouah I., Nazaret C., Pétriacq P., Prigent S., Bénard C., Mengin V., Blein-Nicolas M., Denton AK., Balliau T., Augé S., Bouchez O., Mazat JP., Stitt M., Usadel B., Zivy M., Beauvoit B., Gibon Y., Colombié S..
(2019)
Modeling Protein Destiny in Developing Fruit.Plant Physiology, 3 (180) 1709-1724
Belouah I., Blein-Nicolas M., Balliau T., Gibon Y., Zivy M., Colombié S..
(2019)
Peptide filtering differently affects the performances of XIC-based quantification methods.J Proteomics, (193) 131-141
Bienvenut W. V.,
2 décembre 2019, Des débuts de la protéomique à l'acétylation N-terminale des protéines chez les plantes, HDR, Université Paris Saclay
Carreté L., Ksiezopolska E., Gómez-Molero E., Angoulvant A., Bader O., Fairhead C., Gabaldón T..
(2019)
Genome Comparisons of Candida glabrata Serial Clinical Isolates Reveal Patterns of Genetic Variation in Infecting Clonal Populations.Frontiers in Microbiology, (10) 112
Chauffour F., Bailly M., Perreau F., Cueff G., Suzuki H., Collet B., Frey A., Clément G., Soubigou-Taconnat L., Balliau T., Krieger-Liszkay A., Rajjou L., Marion-Poll A..
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Multi-omics Analysis Reveals Sequential Roles for ABA during Seed Maturation.Plant Physiol., 2 (180) 1198-1218
Cornille A., Antolín F., Garcia E., Vernesi C., Fietta A., Brinkkemper O., Kirleis W., Schlumbaum A., Roldán-Ruiz I..
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A Multifaceted Overview of Apple Tree Domestication.Trends in Plant Science, 8 (24) 770 - 782
Courret C., Gérard P., Ogereau D., Falque M., Moreau L., Montchamp-Moreau C..
(2019)
X-chromosome meiotic drive in Drosophila simulans: a QTL approach reveals the complex polygenic determinism of Paris drive suppression.Heredity, 6 (122) 906-915
Cuello, C., Baldy, A., Brunaud, V., Joets, J., Jacquemot, M.P., Coursol, S..
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A systems biology approach uncovers a gene co-expression network associated with cell wall degradability in maize.PlosOne, 12 (14) e0227011
Cui J., Davanture M., Zivy M., Lamade E., Tcherkez G..
(2019)
Metabolic responses to potassium availability and waterlogging reshape respiration and carbon use efficiency in oil palm.New Phytologist, 1 (223) 310-322
Damerval C., Citerne H., Conde E Silva N., Deveaux Y., Delannoy E., Joets J., Simonnet F., Staedler Y., Schönenberger J., Yansouni J., Le Guilloux M., Sauquet H., Nadot S..
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Unraveling the Developmental and Genetic Mechanisms Underpinning Floral Architecture in Proteaceae.Front Plant Sci, (10) 18
Duruflé H., Ranocha P., Balliau T., Dunand C., Jamet E..
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Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at optimal or sub-optimal temperature.Data in Brief, (27) 104581
Fairhead C., Fischer G., Liti G., Neuveglise C., Schacherer J..
(2019)
Andre Goffeau's imprinting on second generation yeast "genomologists".Yeast, 4 (36) 167-175
Forst E., Enjalbert J., Allard V., Ambroise C., Krissaane I., Mary-Huard T., Robin S., Goldringer I..
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A generalized statistical framework to assess mixing ability from incomplete mixing designs using binary or higher order variety mixtures and application to wheat.Field Crops Research, (242) 107571
Fustier MA., Martínez-Ainsworth NE., Aguirre-Liguori JA., Venon A., Corti H., Rousselet A., Dumas F., Dittberner H., Camarena MG., Grimanelli D., Ovaskainen O., Falque M., Moreau L., Meaux J., Montes-Hernández S., Eguiarte LE., Vigouroux Y., Manicacci D., Tenaillon M..
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Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude.PLOS Genetics, 12 (15) e1008512
Gabaldón T., Fairhead C..
(2019)
Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal.Curr. Genet., 1 (65) 93-98
Hartmann FE., Rodríguez de la Vega RC., Carpentier F., Gladieux P., Cornille A., Hood ME., Giraud T..
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Understanding Adaptation, Coevolution, Host Specialization, and Mating System in Castrating Anther-Smut Fungi by Combining Population and Comparative Genomics.Annu. Rev. Phytopathol., 1 (57) annurev-phyto-082718-095947
Havé M., Luo J., Tellier F., Balliau T., Cueff G., Chardon F., Zivy M., Rajjou L., Cacas JL., Masclaux‐Daubresse C..
(2019)
Proteomic and lipidomic analyses of the Arabidopsis atg5 autophagy mutant reveal major changes in ER and peroxisome metabolisms and in lipid composition.New Phytol, 3 (223) 1461-1477
Henry C., Haller L., Blein-Nicolas M., Zivy M., Canette A., Verbrugghe M., Mézange C., Boulay M., Gardan R., Samson S., Martin V., André-Leroux G., Monnet V..
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Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome.Front. Microbiol., (10) 1329
Jebreen K., Petrizzelli M., Martin OC..
(2019)
Probabilities of Multilocus Genotypes in SIB Recombinant Inbred Lines.Front. Genet., (10) 833
Kreplak J., Madoui MA., Cápal P., Novák P., Labadie K., Aubert G., Bayer PE., Gali KK., Syme RA., Main D., Klein A., Bérard A., Vrbová I., Fournier C., d’Agata L., Belser C., Berrabah W., Toegelová H., Milec Z., Vrána J., Lee HT., Kougbeadjo A., Térézol M., Huneau C., Turo CJ., Mohellibi N., Neumann P., Falque M., Gallardo K., McGee R., Tar’an B., Bendahmane A., Aury JM., Batley J., Le Paslier MC., Ellis N., Warkentin TD., Coyne CJ., Salse J., Edwards D., Lichtenzveig J., Macas J., Doležel J., Wincker P., Burstin J..
(2019)
A reference genome for pea provides insight into legume genome evolution.Nat Genet, 9 (51) 1411-1422
Lecarpentier C., Barillot R., Blanc E., Abichou M., Goldringer I., Barbillon P., Enjalbert J., Andrieu B..
(2019)
WALTer: a three-dimensional wheat model to study competition for light through the prediction of tillering dynamics.Ann Bot, 6 (123) 961-975
Liu S., Cornille A., Decroocq S., Tricon D., Chague A., Eyquard JP., Liu WS., Giraud T., Decroocq V..
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The complex evolutionary history of apricots: species divergence, gene flow and multiple domestication events.Mol Ecol, mec.15296
Mabire C.,
2019-04, Contribution des variations structurales de type insertions/délétions à l'adaptation, la variation des caractères et les performances hybrides chez le maïs, Theses, Université Paris Saclay (COmUE)
Mabire C., Duarte J., Darracq A., Pirani A., Rimbert H., Madur D., Combes V., Vitte C., Praud S., Rivière N., Joets J., Pichon JP., Nicolas S..
(2019)
High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array.BMC Genomics, 1 (20) 848
Mangin B., Rincent R., Rabier CE., Moreau L., Goudemand-Dugue E..
(2019)
Training set optimization of genomic prediction by means of EthAcc.PLOS ONE, 2 (14) e0205629
Maroc L., Fairhead C..
(2019)
A new inducible CRISPR‐Cas9 system useful for genome editing and study of double‐strand break repair in Candida glabrata.Yeast, 12 (36) 723-731
Martinez Palacios P., Jacquemot MP., Tapie M., Rousselet A., Diop M., Remoué C., Falque M., Lloyd A., Jenczewski E., Lassalle G., Chévre AM., Lelandais C., Crespi M., Brabant P., Joets J., Alix K..
(2019)
Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus Allotetraploids.Mol Biol Evol, 4 (36) 709-726
Martínez Ainsworth NE.,
2019-10, Characterizing the genomic determinants and phenotypic responses to altitudinal adaptation in teosintes (Zea mays ssp. parviglumis and ssp. mexicana), Theses, Université Paris Saclay (COmUE)
Millet EJ., Kruijer W., Coupel-Ledru A., Prado SA., Cabrera-Bosquet L., Lacube S., Charcosset A., Welcker C., Eeuwijk F., Tardieu F..
(2019)
Genomic prediction of maize yield across European environmental conditions.Nat Genet, 6 (51) 952-956
Negro SS., Millet EJ., Madur D., Bauland C., Combes V., Welcker C., Tardieu F., Charcosset A., Nicolas S..
(2019)
Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies.BMC Plant Biol., 1 (19) 318
Peace CP., Bianco L., Troggio M., van de Weg E., Howard NP., Cornille A., Durel CE., Myles S., Migicovsky Z., Schaffer RJ., Costes E., Fazio G., Yamane H., van Nocker S., Gottschalk C., Costa F., Chagné D., Zhang X., Patocchi A., Gardiner SE., Hardner C., Kumar S., Laurens F., Bucher E., Main D., Jung S., Vanderzande S..
(2019)
Apple whole genome sequences: recent advances and new prospects.Hortic Res, 1 (6) 59
Petrizzelli M., de Vienne D., Dillmann C..
(2019)
Decoupling the Variances of Heterosis and Inbreeding Effects Is Evidenced in Yeast’s Life-History and Proteomic Traits.Genetics, 2 (211) 741-756
Petrizzelli M.,
2019-07, Mathematical modelling and integration of complex biological data : analysis of the heterosis phenomenon in yeast, Theses, Université Paris Saclay (COmUE)
Rio S.,
2019-04, Contributions to genomic selection and association mapping in structured and admixed populations : application to maize, Theses, Université Paris Saclay (COmUE)
Rio S., Mary-Huard T., Moreau L., Charcosset A..
(2019)
Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel.Theor Appl Genet, 1 (132) 81-96
Ruhsam M., Jessop W., Cornille A., Renny J., Worrell R..
(2019)
Crop-to-wild introgression in the European wild apple Malus sylvestris in Northern Britain.Forestry (Lond), 1 (92) 85-96
Rusconi F..
(2019)
mineXpert: Biological Mass Spectrometry Data Visualization and Mining with Full JavaScript Ability.J. Proteome Res., 5 (18) 2254-2259
Scarcelli N., Cubry P., Akakpo R., Thuillet AC., Obidiegwu J., Baco MN., Otoo E., Sonké B., Dansi A., Djedatin G., Mariac C., Couderc M., Causse S., Alix K., Chaïr H., François O., Vigouroux Y..
(2019)
Yam genomics supports West Africa as a major cradle of crop domestication.Sci. Adv., 5 (5) eaaw1947
Seye AI.,
2019-03, Prédiction assistée par marqueurs de la performance hybride dans un schéma de sélection réciproque : simulations et évaluation expérimentale pour le maïs ensilage, Theses, Université Paris Saclay (COmUE)
Seye AI., Bauland C., Giraud H., Mechin V., Reymond M., Charcosset A., Moreau L..
(2019)
Quantitative trait loci mapping in hybrids between Dent and Flint maize multiparental populations reveals group-specific QTL for silage quality traits with variable pleiotropic effects on yield.Theor Appl Genet, 5 (132) 1523-1542
Srisuwan S., Sihachakr D., Martin J., Valles J., Ressayre A., Brown SC., Siljak-Yakovlev S..
(2019)
Change in nuclear DNA content and pollen size with polyploidisation in the sweet potato (Ipomoea batatas, Convolvulaceae) complex.Plant Biol (Stuttg), 2 (21) 237-247
Tenaillon M., Seddiki K., Mollion M., Guilloux ML., Marchadier É., Ressayre A., Dillmann C..
(2019)
Transcriptomic response to divergent selection for flowering times reveals convergence and key players of the underlying gene regulatory network.bioRxiv, 461947
Termolino P., Falque M., Aiese Cigliano R., Cremona G., Paparo R., Ederveen A., Martin OC., Consiglio FM., Conicella C..
(2019)
Recombination suppression in heterozygotes for a pericentric inversion induces the interchromosomal effect on crossovers in Arabidopsis.Plant J, 6 (100) 1163-1175
Tourrette E., Bernardo R., Falque M., Martin OC..
(2019)
Assessing by Modeling the Consequences of Increased Recombination in Recurrent Selection of Oryza sativa and Brassica rapa.G3, 12 (9) 4169-4181
Tourrette E.,
25 novembre 2019, Unleashing genetic diversity in breeding by increasing recombination: an in silico study, PhD Thesis, Université de Paris-Diderot
Urien C., Legrand J., Montalent P., Casaregola S., Sicard D..
(2019)
Fungal Species Diversity in French Bread Sourdoughs Made of Organic Wheat Flour.Front. Microbiol., (10) 201
Vasseur F., Fouqueau L., de Vienne D., Nidelet T., Violle C., Weigel D..
(2019)
Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana.PLoS Biol, 4 (17) e3000214
Virlouvet L., El Hage F., Griveau Y., Jacquemot MP., Gineau E., Baldy A., Legay S., Horlow C., Combes V., Bauland C., Palafre C., Falque M., Moreau L., Coursol S., Méchin V., Reymond M..
(2019)
Water Deficit-Responsive QTLs for Cell Wall Degradability and Composition in Maize at Silage Stage.Front. Plant Sci., (10) 488
Volk GM., Cornille A., Korban SS..
(2019)
Genetic Diversity and Domestication History in Pyrus.
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van Frank G., Goldringer I., Rivière P., David O..
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Influence of experimental design on decentralized, on-farm evaluation of populations: a simulation study.Euphytica, 7 (215) 126
2018
Achour Z.,
2018-05-15 15/05/18, Réponse du méthylome suite à l’exposition au froid chez une espèce à génome complexe : le maïs (Zea mays ssp. mays), PhD thesis, Université Paris-Saclay
Adenot P., Bansard S., Benaben D., Brunaud V., Caron C., Dehne Garcia A., Duperier C., Falce A., Filangi O., Giacomoni F., Granier F., Grevet P., Guilhot N., Hofstetter A., Joets J., Hotelier T., Langella O., Legrand J., LOAEC M., Lollier V., Moreau L., Morin E., Quesneville H., Rabemanantsoa T., Salin G., Tessier D..
(2018)
AgroDataRing: Une infrastructure partagée et mutualisée pour le stockage longue durée.Cahier des Techniques de l'INRA, 1-7
Akakpo R.,
2018-05-16 16/05/18, Étude de la domestication et de l’adaptation de l’igname (Dioscorea spp) en Afrique par des approches génomiques, PhD thesis, Université Paris-Saclay
Alaux M., Rogers J., Letellier T., Flores R., Alfama F., Pommier C., Mohellibi N., Durand S., Kimmel E., Michotey C., Guerche C., Loaec M., Lainé M., Steinbach D., Choulet F., Rimbert H., Leroy P., Guilhot N., Salse J., Feuillet C., Paux E., Eversole K., Adam-Blondon AF., Quesneville H., International Wheat Genome Sequencing Consortium.
(2018)
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.Genome Biol, 1 (19) 111
Albert B., Ressayre A., Dillmann C., Carlson AL., Swanson RJ., Gouyon PH., Dobritsa AA..
(2018)
Effect of aperture number on pollen germination, survival and reproductive success in Arabidopsis thaliana.Ann. Bot., 4 (121) 733-740
Ali S., Sharma S., Leconte M., Shah SJA., Duveiller E., Enjalbert J., Vallavieille‐Pope C..
(2018)
Low pathotype diversity in a recombinant Puccinia striiformis population through convergent selection at the eastern Himalayan centre of diversity (Nepal).Plant Pathology, 4 (67) 810-820
Aloui A., Recorbet G., Lemaître-Guillier C., Mounier A., Balliau T., Zivy M., Wipf D., Dumas-Gaudot E..
(2018)
The plasma membrane proteome of Medicago truncatula roots as modified by arbuscular mycorrhizal symbiosis.Mycorrhiza, 1 (28) 1-16
Balliau T., Blein-Nicolas M., Zivy M..
(2018)
Evaluation of Optimized Tube-Gel Methods of Sample Preparation for Large-Scale Plant Proteomics.Proteomes, 1 (6) 6
Bennetzen J., Flint-Garcia S., Hirsch C., Tuberosa R., Joets J., Vitte C., Charcosset A..
(2018)
Draft Assembly of the F2 European Maize Genome Sequence and Its Comparison to the B73 Genome Sequence: A Characterization of Genotype-Specific Regions.
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Berrabah F., Balliau T., Ait-Salem EH., George J., Zivy M., Ratet P., Gourion B..
(2018)
Control of the ethylene signaling pathway prevents plant defenses during intracellular accommodation of the rhizobia.The New phytologist, 1 (219) 310-323
Bichang'a G., Da Lage JL., Capdevielle-Dulac C., Zivy M., Balliau T., Sambai K., Le Ru B., Kaiser L., Juma G., Maina ENM., Calatayud PA..
(2018)
alpha-Amylase Mediates Host Acceptance in the Braconid Parasitoid Cotesia flavipes.J Chem Ecol, 11 (44) 1030-1039
Borg J., Kiær LP., Lecarpentier C., Goldringer I., Gauffreteau A., Saint-Jean S., Barot S., Enjalbert J..
(2018)
Unfolding the potential of wheat cultivar mixtures: A meta-analysis perspective and identification of knowledge gaps.Field Crops Res, (221) 298-313
Carbonetto B., Ramsayer J., Nidelet T., Legrand J., Sicard D..
(2018)
Bakery yeasts, a new model for studies in ecology and evolution.Yeast, 11 (35) 591-603
Carrete L., Ksiezopolska E., Pegueroles C., Gomez-Molero E., Saus E., Iraola-Guzman S., Loska D., Bader O., Fairhead C., Gabaldon T..
(2018)
Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans.Current biology : CB, 1 (28) 15-27 e7
Collot D., Nidelet T., Ramsayer J., Martin OC., Meleard S., Dillmann C., Sicard D., Legrand J..
(2018)
Feedback between environment and traits under selection in a seasonal environment: consequences for experimental evolution.Proceedings. Biological sciences, 1876 (285)
Collot D.,
2018-06-19 19/06/18, Modélisation des dynamiques adaptatives de la levure de boulanger S. cerevisae dans un environnement saisonnier, PhD thesis, Université Paris-Saclay
Damerval C., Othman WB., Manicacci D., Jabbour F..
(2018)
Distribution area of the two floral morphs of Nigella damascena L. (Ranunculaceae): A diachronic study using herbarium specimens collected in France.Botany Letters, 3-4 (165) 396-403
Dard-Dascot C., Naquin D., d'Aubenton-Carafa Y., Alix K., Thermes C., van Dijk E..
(2018)
Systematic comparison of small RNA library preparation protocols for next-generation sequencing.BMC genomics, 1 (19) 118
Darracq A., Vitte C., Nicolas S., Duarte J., Pichon JP., Mary-Huard T., Chevalier C., Bérard A., Le Paslier MC., Rogowsky P., Charcosset A., Joets J..
(2018)
Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.BMC Genomics, 1 (19) 119
Fiévet J., Nidelet T., Dillmann C., de Vienne D..
(2018)
Heterosis Is a Systemic Property Emerging From Non-linear Genotype-Phenotype Relationships: Evidence From in Vitro Genetics and Computer Simulations.Front. Genet., (9)
Forst E.,
2018-03, Développement de méthodes d'estimation de l'aptitude au mélange pour la prédiction des performances et la sélection de mélanges variétaux chez le blé tendre, et co-conception d'idéotypes de mélanges adaptés à l'agriculture biologique, Theses, Université Paris Saclay (COmUE)
Grigolon S., Bravi B., Martin OC..
(2018)
Responses to auxin signals: an operating principle for dynamical sensitivity yet high resilience.Royal Society Open Science, 1 (5) 172098
Havé M., Balliau T., Cottyn-Boitte B., Dérond E., Cueff G., Soulay F., Lornac A., Reichman P., Dissmeyer N., Avice JC., Gallois P., Rajjou L., Zivy M., Masclaux-Daubresse C..
(2018)
Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?.J Exp Bot, 6 (69) 1369-1385
Käfer J., Betancourt A., Villain AS., Fernandez M., Vignal C., Marais GAB., Tenaillon M..
(2018)
Progress and Prospects in Gender Visibility at SMBE Annual Meetings.Genome Biol Evol, 3 (10) 901-908
Lamichhane JR., Arseniuk E., Boonekamp P., Czembor J., Decroocq V., Enjalbert J., Finckh MR., Korbin M., Koppel M., Kudsk P., Mesterhazy A., Sosnowska D., Zimnoch‐Guzowska E., Messéan A..
(2018)
Advocating a need for suitable breeding approaches to boost integrated pest management: a European perspective.Pest Management Science, 6 (74) 1219-1227
Laporte F.,
2018-03-13 13/03/18, Développement de méthodes statistiques pour l’identification de gènes d’intérêt en présence d’apparentement et de dominance, application à la génétique du maïs, PhD thesis, Université Paris-Saclay
Lorant A., Ross-Ibarra J., Tenaillon M., Dutheil JY..
(2018)
Genomics of long- and short- term adaptation in maize and teosintes.
, (accepted) in press
Lorant A.,
2018-03, Plasticity and genetic adaptation as contributors to the evolutionary history of cultivated maize and its wild relatives, Theses, Université Paris Saclay (COmUE)
Odonkor S., Choi S., Chakraborty D., Martinez-Bello L., Wang X., Bahri BA., Tenaillon M., Panaud O., Devos KM..
(2018)
QTL Mapping Combined With Comparative Analyses Identified Candidate Genes for Reduced Shattering in Setaria italica.Front. Plant Sci., (9)
Perronne R., Goldringer I..
(2018)
Application of a partitioning procedure based on Rao quadratic entropy index to characterize the temporal evolution of in situ varietal and genetic diversity of bread wheat in France over the period 1981–2006.Theor Appl Genet, 4 (131) 775-786
Raffoux X.,
2018-11, Diversité et déterminisme génétique de la recombinaison méiotique chez Saccharomyces cerevisiae, Theses, Université Paris Saclay (COmUE)
Raffoux X., Bourge M., Dumas F., Martin OC., Falque M..
(2018)
High-throughput measurement of recombination rates and genetic interference in Saccharomyces cerevisiae.Yeast, 6 (35) 431-442
Raffoux X., Bourge M., Dumas F., Martin OC., Falque M..
(2018)
Role of Cis, Trans, and Inbreeding Effects on Meiotic Recombination in Saccharomyces cerevisiae.Genetics, 4 (210) 1213-1226
Richard MMS., Gratias A., Thareau V., Kim KD., Balzergue S., Joets J., Jackson SA., Geffroy V..
(2018)
Genomic and epigenomic immunity in common bean: the unusual features of NB-LRR gene family.DNA Res, 2 (25) 161-172
Senghor Y., Guitard J., Angoulvant A., Hennequin C..
(2018)
Cryptococcal antigen detection in broncho-alveolar lavage fluid.Med Mycol, 6 (56) 774-777
van Frank G.,
2018-12, Gestion participative de la diversité cultivée et création de mélanges diversifiés de blé tendre à la ferme, Theses, Université Paris Saclay (COmUE)
2017
Adam-Blondon AF., Alaux M., Durand S., Letellier T., Merceron G., Mohellibi N., Pommier C., Steinbach D., Alfama F., Amselem J., Charruaud D., Choisne N., Flores R., Guerche C., Jamilloux V., Kimmel E., Lapalu N., Loaec M., Michotey C., Quesneville H., van Dijk ADJ..
(2017)
Mining Plant Genomic and Genetic Data Using the GnpIS Information System.
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Aguirre‐Liguori JA., Tenaillon M., Vázquez‐Lobo A., Gaut BS., Jaramillo‐Correa JP., Montes‐Hernandez S., Souza V., Eguiarte LE..
(2017)
Connecting genomic patterns of local adaptation and niche suitability in teosintes.Molecular Ecology, 16 (26) 4226-4240
Akakpo R., Scarcelli N., Chaïr H., Dansi A., Djedatin G., Thuillet AC., Rhoné B., François O., Alix K., Vigouroux Y..
(2017)
Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes.BMC Genomics, 1 (18) 782
Alix K., Gérard P., Schwarzacher T., Heslop-Harrison JSP..
(2017)
Polyploidy and interspecific hybridization: partners for adaptation, speciation and evolution in plants.Ann Bot, 2 (120) 183-194
Angoulvant A., ANOFEL ., Houzé S., Botterel-Chartier F..
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Examen mycologique des prélèvements respiratoires (chap 9).
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Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review.Agron. Sustain. Dev., 2 (37) 13
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Estimating the Number of Block Boundaries from Diagonal Blockwise Matrices Without Penalization.Scandinavian Journal of Statistics, 2 (44) 563-580
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Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield.The Plant Cell, 5 (29) 919-943
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Characterization of CYCLOIDEA-like genes in Proteaceae, a basal eudicot family with multiple shifts in floral symmetry.Ann Bot, 3 (119) 367-378
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Genetics of flower development in Ranunculales – a new, basal eudicot model order for studying flower evolution.New Phytologist, 2 (216) 361-366
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Letter to the 21st century botanist: “What is a flower?” 6. The evo-devo of floral symmetry.Botany Letters, 3 (164) 193-196
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An Integrated “Multi-Omics” Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality.Front Plant Sci, (8)
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Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.).G3: Genes, Genomes, Genetics, g3.300121.2017
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Reciprocal Genetics: Identifying QTL for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups.Genetics, 3 (207) 1167-1180
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Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank.Theor Appl Genet, 10 (130) 2165-2189
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2017-06-12 06/12/17, Some contributions to statistical modeling and model selection with applications to genomics and quantitative genetics, HDR, Université Paris Sud
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2017-06-13 13/06/17, Utilisation des marqueurs en sélection : des QTL à la Sélection Génomique, HDR, Université Paris Sud
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Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations.Theor Appl Genet, 11 (130) 2231-2247
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An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung.Journal of Immunological Methods, (450) 58-65
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Old and new pathogenic Nakaseomyces species: epidemiology, biology, identification, pathogenicity and antifungal resistance.FEMS Yeast Res, 2 (16)
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Genome scan reveals selection acting on genes linked to stress response in wild pearl millet.Molecular Ecology, 21 (25) 5500-5512
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Editorial: Candida glabrata, the other yeast pathogen.FEMS Yeast Res, 2 (16)
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SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population.BMC Genomics, (17)
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2016-01-13 13/01/16, De la génétique des clones à l'agroécologie, HDR, Université Paris-Sud
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Three novel ascomycetous yeast species of the Kazachstania clade, Kazachstania saulgeensis sp. nov., Kazachstania serrabonitensis sp. nov. and Kazachstania australis sp. nov. Reassignment of Candida humilis to Kazachstania humilis f.a. comb. nov. and Candida pseudohumilis to Kazachstania pseudohumilis f.a. comb. nov.International journal of systematic and evolutionary microbiology, 12 (66) 5192-5200
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Arabidopsis thaliana root cell wall proteomics: Increasing the proteome coverage using a combinatorial peptide ligand library and description of unexpected Hyp in peroxidase amino acid sequences.Proteomics, 3 (16) 491-503
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Testing the link between genome size and growth rate in maize.PeerJ, (4) e2408
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Good year, bad year: changing strategies, changing networks? A two-year study on seed acquisition in northern Cameroon.Ecol Soc, 2 (21) 34
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Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis.Ecology and evolution, 9 (6) 2790-804
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Photo quiz. Dyspnea and fever in an allogeneic stem cell recipient.Clin. Infect. Dis., 1 (60) 100, 157-158
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Proteomic Approach to Identify Nuclear Proteins in Wheat Grain.J. Proteome Res., 10 (14) 4432-4439
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Plans d’expérience.
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Blein-Nicolas M., Albertin W., da Silva T., Valot B., Balliau T., Masneuf-Pomarède I., Bely M., Marullo P., Sicard D., Dillmann C., de Vienne D., Zivy M..
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A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast.Mol. Cell Proteomics, 8 (14) 2056-2071
Boisnard S., Zhou Li Y., Arnaise S., Sequeira G., Raffoux X., Enache-Angoulvant A., Bolotin-Fukuhara M., Fairhead C..
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Efficient Mating-Type Switching in Candida glabrata Induces Cell Death.PLoS ONE, 10 (10) e0140990
Chapeland-Leclerc F., Dilmaghani A., Ez-Zaki L., Boisnard S., Da Silva B., Gaslonde T., Poree FH., Ruprich-Robert G..
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Systematic gene deletion and functional characterization of histidine kinase phosphorelay receptors (HKRs) in the human pathogenic fungus Aspergillus fumigatus.Fungal Genet. Biol., (84) 1-11
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Floral vascular patterns of the double-flowered and wild-type morphs of Nigella damascena L. (Ranunculaceae).Modern Phytomorphology, (7) 13-20
Desclée de Maredsous C., Oosting A., Delteil C., Blachier F., Barbillon P., Mary-Huard T., Tome D., Oozeer R., Davila AM..
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High-Protein Diet during Gestation Promotes Adiposity and Food Intake in Female Rat Pups in the Longer Term.Faseb J., 1 (29)
Durand E., Tenaillon M., Raffoux X., Thépot S., Falque M., Jamin P., Bourgais A., Ressayre A., Dillmann C..
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Dearth of polymorphism associated with a sustained response to selection for flowering time in maize.BMC Evol Biol, 1 (15) 103
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2015-10-15 15/10/15, Sur les traces de la recombinaison méiotique, source de biodiversité et outil génétique, HDR, Université Paris-Sud
Gaba S., Lescourret F., Boudsocq S., Enjalbert J., Hinsinger P., Journet EP., Navas ML., Wery J., Louarn G., Malezieux E., Pelzer E., Prudent M., Ozier-Lafontaine H..
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Multiple cropping systems as drivers for providing multiple ecosystem services: from concepts to design.Agron Sustain Dev, 2 (35) 607-623
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Pour comprendre l'amélioration des plantes. Enjeux, méthodes, objectifs et critères de sélection.
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Modelling the emergence of polarity patterns for the intercellular transport of auxin in plants.Journal of the Royal Society, Interface / the Royal Society, 106 (12)
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Candida inconspicua and Candida norvegensis: new insights into identification in relation to sexual reproduction and genome organization.Journal of clinical microbiology, 5 (53) 1655-61
Henry A.,
2015-12, Kinetic models of metabolism: model construction, model analysis and biotechnological applications, Theses, Université Paris Diderot
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2015-12-17 17/12/15, Modélisation cinétique du métabolisme : construction du modèle, analyse et applications biotechnologiques, PhD thesis, Université Paris Diderot - Paris 7
Hummel M., Dobrenel T., Cordewener JJ., Davanture M., Meyer C., Smeekens SJ., Bailey-Serres J., America TA., Hanson J..
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Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes.Journal of proteomics, (128) 436-49
Jabbour F., Udron M., Le Guilloux M., Goncalves B., Manicacci D., Nadot S., Damerval C..
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Flower development schedule and AGAMOUS-like gene expression patterns in two morphs of Nigella damascena (Ranunculaceae) differing in floral architecture.Bot J Linn Soc, 4 (178) 608-619
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Ranunculacean flower terata: Records, a classification, and some clues about floral developmental genetics and evolution.Flora, (217) 64-74
Jaureguiberry S., Thellier M., Ndour PA., Ader F., Roussel C., Sonneville R., Mayaux J., Matheron S., Angoulvant A., Wyplosz B., Rapp C., Pistone T., Lebrun-Vignes B., Kendjo E., Danis M., Houze S., Bricaire F., Mazier D., Buffet P., Caumes E..
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Delayed-onset hemolytic anemia in patients with travel-associated severe malaria treated with artesunate, France, 2011-2013.Emerging infectious diseases, 5 (21) 804-12
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Inherited CARD9 deficiency in 2 unrelated patients with invasive Exophiala infection.The Journal of infectious diseases, 8 (211) 1241-50
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Occupational Determinants of Methicillin-Resistant Staphylococcus aureus Colonization Among Healthcare Workers: A Longitudinal Study in a Rehabilitation Center.Infect. Control Hosp. Epidemiol., 7 (36) 767-776
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Detailed Contact Data and the Dissemination of Staphylococcus aureus in Hospitals.PLoS computational biology, 3 (11) e1004170
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Heterozygote advantage at MHC DRB may influence response to infectious disease epizootics.Molecular ecology, 7 (24) 1419-32
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Relationships between wheat grain physical characteristics studied through near-isogenic lines with distinct puroindoline-b allele.Theor Appl Genet, 5 (128) 913-29
Poncet V., Scutt C., Tournebize R., Villegente M., Cueff G., Rajjou L., Balliau T., Zivy M., Fogliani B., Job C., de Kochko A., Sarramegna-Burtet V., Job D..
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The Amborella vacuolar processing enzyme family.Frontiers in plant science, (6) 618
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Introns Structure Patterns of Variation in Nucleotide Composition in Arabidopsis thaliana and Rice Protein-Coding Genes.Genome biology and evolution, 10 (7) 2913-28
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Rapid diagnosis of cryptococcosis using an antigen detection immunochromatographic test.The Journal of infection, 5 (70) 499-503
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Hierarchical Bayesian Modeling for Flexible Experiments in Decentralized Participatory Plant Breeding.Crop Science, 3 (55) 1053-1067
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Response to farmer mass selection in early generation progeny of bread wheat landrace crosses.Renewable Agriculture and Food Systems, 2 (30) 190-201
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Study on Essential Derivation in Maize: III. Selection and Evaluation of a Panel of Single Nucleotide Polymorphism Loci for Use in European and North American Germplasm.Crop Science, 3 (55) 1170-1180
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Statistical Physics Methods Provide the Exact Solution to a Long-Standing Problem of Genetics.Phys. Rev. Lett., 23 (114) 238101
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Zygomorphy evolved from disymmetry in Fumarioideae (Papaveraceae, Ranunculales): new evidence from an expanded molecular phylogenetic framework.Ann Bot, 6 (115) 895-914
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Recombination patterns in maize reveal limits to crossover homeostasis.PNAS, 52 (112) 15982-15987
Tayeh N., Aluome C., Falque M., Jacquin F., Klein A., Chauveau A., Bérard A., Houtin H., Rond C., Kreplak J., Boucherot K., Martin C., Baranger A., Pilet‐Nayel ML., Warkentin TD., Brunel D., Marget P., Paslier MCL., Aubert G., Burstin J..
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Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map.The Plant Journal, 6 (84) 1257-1273
Thomas M., Verzelen N., Barbillon P., Coomes OT., Caillon S., McKey D., Elias M., Garine E., Raimond C., Dounias E., Jarvis D., Wencélius J., Leclerc C., Labeyrie V., Cuong PH., Hue Ngoc NT., Sthapit B., Rana RB., Barnaud A., Violon C., Arias RE., Latournerie Moreno L., De Santis P., Massol F., Woodward G., Bohan DA..
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A Network-Based Method to Detect Patterns of Local Crop Biodiversity: Validation at the Species and Infra-Species Levels.
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Diversifying mechanisms in the on-farm evolution of crop mixtures.Molecular Ecology, 12 (24) 2937-2954
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Efficiently Tracking Selection in a Multiparental Population: The Case of Earliness in Wheat.Genetics, 2 (199) 609-623
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Interest of a Multiparental and Outcrossing Wheat Population for Fine Mapping.
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2015-01, Diversité des espèces de levures dans des levains naturels français produits à partir de farine issue de l'Agriculture Biologique : une étude pilote pour analyser les pratiques boulangères et les patterns des communautés microbiennes, Theses, Université Paris Sud - Paris XI
Zaag R., Tamby JP., Guichard C., Tariq Z., Rigaill G., Delannoy E., Renou JP., Balzergue S., Mary-Huard T., Aubourg S., Martin-Magniette ML., Brunaud V..
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GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response.Nucleic Acids Res, D1 (43) D1010-D1017
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The quest for tolerant varieties: the importance of integrating “omics” techniques to phenotyping.Front. Plant Sci., (6)
da Silva T., Albertin W., Dillmann C., Bely M., la Guerche S., Giraud C., Huet S., Sicard D., Masneuf-Pomarede I., de Vienne D., Marullo P..
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Hybridization within Saccharomyces Genus Results in Homoeostasis and Phenotypic Novelty in Winemaking Conditions.PloS one, 5 (10) e0123834
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Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies.BioMed research international, (2015) 904541
