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metaGE: Investigating Genotype × Environment interactions through meta-analysis.
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Desbiez-Piat A., Ressayre A., Marchadier É., Noly A., Bourgais A., Galic N., Le Guilloux M., Tenaillon M., Dillmann C..
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The coupling between mutations effects and environment guides the exploration of phenotypic space as evidenced in artificial selection experiments.
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Gawinowski M.,
11/01/2023, Importance des interactions plante-plante dans les mélanges de variétés de blé tendre : étude de la compétition pour la lumière avec une approche interdisciplinaire entre expérimentation au champ et modélisation mécaniste, PhD, Université Paris-Saclay
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Obituary: Dominique Job (1947-2022).Frontiers in Plant Science, (14)
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Genome and Environment Based Prediction Models and Methods of Complex Traits Incorporating Genotype × Environment Interaction.
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Phenomic Selection: A New and Efficient Alternative to Genomic Selection.
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Heavy isotope labeling and mass spectrometry reveal unexpected remodeling of bacterial cell wall expansion in response to drugs.eLife, (11) e72863
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Evidence of an additional centre of apple domestication in Iran, with contributions from the Caucasian crab apple Malus orientalis Uglitzk. to the cultivated apple gene pool.Molecular Ecology, 21 (31) 5581-5601
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Gene network simulations provide testable predictions for the molecular domestication syndrome.Genetics, 2 (220) iyab214
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The East Asian wild apples, Malus baccata (L.) Borkh and Malus hupehensis (Pamp.) Rehder., are additional contributors to the genomes of cultivated European and Chinese varieties.Molecular Ecology, (accepted)
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HDR Ecological genomics of multi-species interactions..
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Unraveling coevolutionary dynamics using ecological genomics.Trends in Genetics, (accepted)
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Evolution of enzyme levels in metabolic pathways: A theoretical approach. Part 1.Journal of Theoretical Biology, (538) 111015
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Editorial: Applications and Methods in Genomic Networks.Front. Genet., (13) 936015
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The PROSCOOP10 Gene Encodes Two Extracellular Hydroxylated Peptides and Impacts Flowering Time in Arabidopsis.Plants (Basel), 24 (11) 3554
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Modern Metaproteomics: A Unique Tool to Characterize the Active Microbiome in Health and Diseases, and Pave the Road towards New Biomarkers—Example of Crohn’s Disease and Ulcerative Colitis Flare-Ups.Cells, 8 (11) 1340
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Efficient ReML inference in variance component mixed models using a Min-Max algorithm.PLoS Comput Biol, 1 (18) e1009659
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Comparison of Different Label-Free Techniques for the Semi-Absolute Quantification of Protein Abundance.Proteomes, 1 (10) 2
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From cultivar mixtures to allelic mixtures: opposite effects of allelic richness between genotypes and genotype richness in wheat.New Phytologist, 6 (233) 2573-2584
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Phenomic selection in wheat breeding: identification and optimisation of factors influencing prediction accuracy and comparison to genomic selection.Theor Appl Genet, 3 (135) 895-914
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Phenomic selection in wheat breeding: prediction of the genotype-by-environment interaction in multi-environment breeding trials.Theor Appl Genet, 10 (135) 3337-3356
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Modeling Temperature-Dependent Development Rate in Insects and Implications of Experimental Design.Environmental Entomology, 1 (51) 132-144
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SeSAM: software for automatic construction of order-robust linkage maps.BMC Bioinformatics, 1 (23) 499
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Physiological adaptive traits are a potential allele reservoir for maize genetic progress under challenging conditions.Nat Commun, 1 (13) 3225
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In vivo identification of putative CPK5 substrates in Arabidopsis thaliana.Plant Science, (314) 111121
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The Nitrate Transporter MtNPF6.8 Is a Master Sensor of Nitrate Signal in the Primary Root Tip of Medicago truncatula.Front Plant Sci, (13) 832246
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Special issue on “The relationship between genotype and phenotype: new insight into an old question”.Genetica, 3-4 (150) 151-151
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What is a phenotype? History and new developments of the concept.Genetica, 3-4 (150) 153-158
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Microbial community dispersal from wheat grains to sourdoughs: A contribution of participatory research.Molecular Ecology, mec.16630
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Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array.Front. Plant Sci., (11) 568699
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Proteomic data from leaves of twenty-four sunflower genotypes under water deficit.OCL, (28) 12
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The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative.Hortic Res, 1 (8) 109
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The INCREASE project: Intelligent Collections of food‐legume genetic resources for European agrofood systems.The Plant Journal, 3 (108) 646-660
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Functional–Structural Plant Modeling Highlights How Diversity in Leaf Dimensions and Tillering Capability Could Promote the Efficiency of Wheat Cultivar Mixtures.Front. Plant Sci., (12) 734056
Blanc E.,
2021-03, Modélisation des conséquences évolutives de la compétition pour la lumière dans des populations composites de blé, Theses, Université Paris-Saclay
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The Siberian wild apple is an additional contributor to the genome of the cultivated European and Chinese apple.bioRxiv,
Coton C.,
2021-12, Évolution des concentrations d'enzymes dans les réseaux métaboliques, Theses, Université Paris-Saclay
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Plant low-K responses are partly due to Ca prevalence and the low-K biomarker putrescine does not protect from Ca side effects but acts as a metabolic regulator.Plant Cell Environ, 5 (44) 1565-1579
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Optimization of sampling designs for pedigrees and association studies.Biometrics, 3 (78) 1056-1066
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Interplay between extreme drift and selection intensities favors the fixation of beneficial mutations in selfing maize populations.Genetics, 2 (219)
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2021, The Dynamics of the Response to Selection under High Drift-High Selection: Insights from Saclay’s Divergent Selection Experiments for Flowering Time in Maize, PhD Thesis, Université Paris-Saclay
Deveaux Y., Conde E Silva N., Manicacci D., Le Guilloux M., Brunaud V., Belcram H., Joets J., Soubigou-Taconnat L., Delannoy E., Corti H., Balzergue S., Caius J., Nadot S., Damerval C..
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Cell wall proteomic datasets of stems and leaves of Brachypodium distachyon.Data in Brief, (35) 106818
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Arabidopsis thaliana 2,3‐bisphosphoglycerate‐independent phosphoglycerate mutase 2 activity requires serine 82 phosphorylation.Plant J, 5 (107) 1478-1489
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Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks.Frontiers in Genetics, (11) 1703
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Genomic Prediction of Hybrid Crops Allows Disentangling Dominance and Epistasis.Genetics, iyab026
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Population genomics of apricots unravels domestication history and adaptive events.Nat Commun, 1 (12) 3956
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Advances in Breeding for Mixed Cropping – Incomplete Factorials and the Producer/Associate Concept.Front. Plant Sci., (11) 620400
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2021-12, Breeding for mixed cropping : lessons learned from a genetic analysis of pea (P. sativum L.) - barley (H. vulgare L.) mixtures, Theses, Université Paris-Saclay
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Proteomics of developing pea seeds reveals a complex antioxidant network underlying the response to sulfur deficiency and water stress.Journal of Experimental Botany, eraa571
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Evolution of the distribution area of the Mediterranean Nigella damascena and a likely multiple molecular origin of its perianth dimorphism.Flora, (274) 151735
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Editorial: Mobile Elements and Plant Genome Evolution, Comparative Analyzes and Computational Tools.Front. Plant Sci., (12) 735134
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mineXpert2 : Full-Depth Visualization and Exploration of MS n Mass Spectrometry Data.J. Am. Soc. Mass Spectrom., 4 (32) 1138-1141
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2021-02, Etude sur le changement de type sexuel et les cassures chromosomiques chez Candida glabrata, Theses, Université Paris-Saclay
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Lessons from the Nakaseomyces: mating-type switching, DSB repair and evolution of Ho.Curr Genet, 5 (67) 685-693
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Error rate control for classification rules in multiclass mixture models.The International Journal of Biostatistics, 0 (0)
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Querying multiple sets of P -values through composed hypothesis testing.Bioinformatics, 1 (38) 141-148
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Intraspecific variability in membrane proteome, cell growth, and morphometry of the invasive marine neurotoxic dinoflagellate Alexandrium pacificum grown in metal-contaminated conditions.Science of The Total Environment, (715) 136834
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Bayesian inference of natural selection from spatiotemporal phenotypic data.Theoretical Population Biology, (131) 00-109
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SHiNeMaS: a web tool dedicated to seed lots history, phenotyping and cultural practices.Plant Methods, 1 (16) 98
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Comparative quantitative proteomics of osmotic signal transduction mutants in Botrytis cinerea explain mutant phenotypes and highlight interaction with cAMP and Ca2+ signalling pathways.Journal of Proteomics, (212) 103580
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Commoning the seeds: alternative models of collective action and open innovation within French peasant seed groups for recreating local knowledge commons.Agric Hum Values,
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Accounting for Group-Specific Allele Effects and Admixture in Genomic Predictions: Theory and Experimental Evaluation in Maize.Genetics, 1 (216) 27-41
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20 octobre 2020, Composantes de la dynamique de l’interaction entre le maïs et les insectes lépidoptères foreurs de tige, PhD thesis, Université Paris-Saclay
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Revisiting hybrid breeding designs using genomic predictions: simulations highlight the superiority of incomplete factorials between segregating families over topcross designs.Theor Appl Genet, 6 (133) 1995-2010
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A generalized statistical framework to assess mixing ability from incomplete mixing designs using binary or higher order variety mixtures and application to wheat.Field Crops Research, (242) 107571
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A reference genome for pea provides insight into legume genome evolution.Nat Genet, 9 (51) 1411-1422
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WALTer: a three-dimensional wheat model to study competition for light through the prediction of tillering dynamics.Ann Bot, 6 (123) 961-975
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Quantitative trait loci mapping in hybrids between Dent and Flint maize multiparental populations reveals group-specific QTL for silage quality traits with variable pleiotropic effects on yield.Theor Appl Genet, 5 (132) 1523-1542
Srisuwan S., Sihachakr D., Martin J., Valles J., Ressayre A., Brown SC., Siljak-Yakovlev S..
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Change in nuclear DNA content and pollen size with polyploidisation in the sweet potato (Ipomoea batatas, Convolvulaceae) complex.Plant Biol (Stuttg), 2 (21) 237-247
Tenaillon M., Seddiki K., Mollion M., Guilloux ML., Marchadier É., Ressayre A., Dillmann C..
(2019)
Transcriptomic response to divergent selection for flowering times reveals convergence and key players of the underlying gene regulatory network.bioRxiv, 461947
Termolino P., Falque M., Aiese Cigliano R., Cremona G., Paparo R., Ederveen A., Martin OC., Consiglio FM., Conicella C..
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Recombination suppression in heterozygotes for a pericentric inversion induces the interchromosomal effect on crossovers in Arabidopsis.Plant J, 6 (100) 1163-1175
Tourrette E., Bernardo R., Falque M., Martin OC..
(2019)
Assessing by Modeling the Consequences of Increased Recombination in Recurrent Selection of Oryza sativa and Brassica rapa.G3, 12 (9) 4169-4181
Tourrette E.,
25 novembre 2019, Unleashing genetic diversity in breeding by increasing recombination: an in silico study, PhD Thesis, Université de Paris-Diderot
Urien C., Legrand J., Montalent P., Casaregola S., Sicard D..
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Fungal Species Diversity in French Bread Sourdoughs Made of Organic Wheat Flour.Front. Microbiol., (10) 201
Vasseur F., Fouqueau L., de Vienne D., Nidelet T., Violle C., Weigel D..
(2019)
Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana.PLoS Biol, 4 (17) e3000214
Virlouvet L., El Hage F., Griveau Y., Jacquemot MP., Gineau E., Baldy A., Legay S., Horlow C., Combes V., Bauland C., Palafre C., Falque M., Moreau L., Coursol S., Méchin V., Reymond M..
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Water Deficit-Responsive QTLs for Cell Wall Degradability and Composition in Maize at Silage Stage.Front. Plant Sci., (10) 488
Volk GM., Cornille A., Korban SS..
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Genetic Diversity and Domestication History in Pyrus.
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van Frank G., Goldringer I., Rivière P., David O..
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Influence of experimental design on decentralized, on-farm evaluation of populations: a simulation study.Euphytica, 7 (215) 126
2018
Achour Z.,
2018-05-15 15/05/18, Réponse du méthylome suite à l’exposition au froid chez une espèce à génome complexe : le maïs (Zea mays ssp. mays), PhD thesis, Université Paris-Saclay
Adenot P., Bansard S., Benaben D., Brunaud V., Caron C., Dehne Garcia A., Duperier C., Falce A., Filangi O., Giacomoni F., Granier F., Grevet P., Guilhot N., Hofstetter A., Joets J., Hotelier T., Langella O., Legrand J., LOAEC M., Lollier V., Moreau L., Morin E., Quesneville H., Rabemanantsoa T., Salin G., Tessier D..
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AgroDataRing: Une infrastructure partagée et mutualisée pour le stockage longue durée.Cahier des Techniques de l'INRA, 1-7
Akakpo R.,
2018-05-16 16/05/18, Étude de la domestication et de l’adaptation de l’igname (Dioscorea spp) en Afrique par des approches génomiques, PhD thesis, Université Paris-Saclay
Alaux M., Rogers J., Letellier T., Flores R., Alfama F., Pommier C., Mohellibi N., Durand S., Kimmel E., Michotey C., Guerche C., Loaec M., Lainé M., Steinbach D., Choulet F., Rimbert H., Leroy P., Guilhot N., Salse J., Feuillet C., Paux E., Eversole K., Adam-Blondon AF., Quesneville H., International Wheat Genome Sequencing Consortium.
(2018)
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.Genome Biol, 1 (19) 111
Albert B., Ressayre A., Dillmann C., Carlson AL., Swanson RJ., Gouyon PH., Dobritsa AA..
(2018)
Effect of aperture number on pollen germination, survival and reproductive success in Arabidopsis thaliana.Ann. Bot., 4 (121) 733-740
Ali S., Sharma S., Leconte M., Shah SJA., Duveiller E., Enjalbert J., Vallavieille‐Pope C..
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Low pathotype diversity in a recombinant Puccinia striiformis population through convergent selection at the eastern Himalayan centre of diversity (Nepal).Plant Pathology, 4 (67) 810-820
Aloui A., Recorbet G., Lemaître-Guillier C., Mounier A., Balliau T., Zivy M., Wipf D., Dumas-Gaudot E..
(2018)
The plasma membrane proteome of Medicago truncatula roots as modified by arbuscular mycorrhizal symbiosis.Mycorrhiza, 1 (28) 1-16
Balliau T., Blein-Nicolas M., Zivy M..
(2018)
Evaluation of Optimized Tube-Gel Methods of Sample Preparation for Large-Scale Plant Proteomics.Proteomes, 1 (6) 6
Bennetzen J., Flint-Garcia S., Hirsch C., Tuberosa R., Joets J., Vitte C., Charcosset A..
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Draft Assembly of the F2 European Maize Genome Sequence and Its Comparison to the B73 Genome Sequence: A Characterization of Genotype-Specific Regions.
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Berrabah F., Balliau T., Ait-Salem EH., George J., Zivy M., Ratet P., Gourion B..
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Control of the ethylene signaling pathway prevents plant defenses during intracellular accommodation of the rhizobia.The New phytologist, 1 (219) 310-323
Bichang'a G., Da Lage JL., Capdevielle-Dulac C., Zivy M., Balliau T., Sambai K., Le Ru B., Kaiser L., Juma G., Maina ENM., Calatayud PA..
(2018)
alpha-Amylase Mediates Host Acceptance in the Braconid Parasitoid Cotesia flavipes.J Chem Ecol, 11 (44) 1030-1039
Borg J., Kiær LP., Lecarpentier C., Goldringer I., Gauffreteau A., Saint-Jean S., Barot S., Enjalbert J..
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Unfolding the potential of wheat cultivar mixtures: A meta-analysis perspective and identification of knowledge gaps.Field Crops Res, (221) 298-313
Carbonetto B., Ramsayer J., Nidelet T., Legrand J., Sicard D..
(2018)
Bakery yeasts, a new model for studies in ecology and evolution.Yeast, 11 (35) 591-603
Carrete L., Ksiezopolska E., Pegueroles C., Gomez-Molero E., Saus E., Iraola-Guzman S., Loska D., Bader O., Fairhead C., Gabaldon T..
(2018)
Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans.Current biology : CB, 1 (28) 15-27 e7
Collot D., Nidelet T., Ramsayer J., Martin OC., Meleard S., Dillmann C., Sicard D., Legrand J..
(2018)
Feedback between environment and traits under selection in a seasonal environment: consequences for experimental evolution.Proceedings. Biological sciences, 1876 (285)
Collot D.,
2018-06-19 19/06/18, Modélisation des dynamiques adaptatives de la levure de boulanger S. cerevisae dans un environnement saisonnier, PhD thesis, Université Paris-Saclay
Damerval C., Othman WB., Manicacci D., Jabbour F..
(2018)
Distribution area of the two floral morphs of Nigella damascena L. (Ranunculaceae): A diachronic study using herbarium specimens collected in France.Botany Letters, 3-4 (165) 396-403
Dard-Dascot C., Naquin D., d'Aubenton-Carafa Y., Alix K., Thermes C., van Dijk E..
(2018)
Systematic comparison of small RNA library preparation protocols for next-generation sequencing.BMC genomics, 1 (19) 118
Darracq A., Vitte C., Nicolas S., Duarte J., Pichon JP., Mary-Huard T., Chevalier C., Bérard A., Le Paslier MC., Rogowsky P., Charcosset A., Joets J..
(2018)
Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.BMC Genomics, 1 (19) 119
Fiévet J., Nidelet T., Dillmann C., de Vienne D..
(2018)
Heterosis Is a Systemic Property Emerging From Non-linear Genotype-Phenotype Relationships: Evidence From in Vitro Genetics and Computer Simulations.Front. Genet., (9)
Forst E.,
2018-03, Développement de méthodes d'estimation de l'aptitude au mélange pour la prédiction des performances et la sélection de mélanges variétaux chez le blé tendre, et co-conception d'idéotypes de mélanges adaptés à l'agriculture biologique, Theses, Université Paris Saclay (COmUE)
Grigolon S., Bravi B., Martin OC..
(2018)
Responses to auxin signals: an operating principle for dynamical sensitivity yet high resilience.Royal Society Open Science, 1 (5) 172098
Havé M., Balliau T., Cottyn-Boitte B., Dérond E., Cueff G., Soulay F., Lornac A., Reichman P., Dissmeyer N., Avice JC., Gallois P., Rajjou L., Zivy M., Masclaux-Daubresse C..
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Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?.J Exp Bot, 6 (69) 1369-1385
Käfer J., Betancourt A., Villain AS., Fernandez M., Vignal C., Marais GAB., Tenaillon M..
(2018)
Progress and Prospects in Gender Visibility at SMBE Annual Meetings.Genome Biol Evol, 3 (10) 901-908
Lamichhane JR., Arseniuk E., Boonekamp P., Czembor J., Decroocq V., Enjalbert J., Finckh MR., Korbin M., Koppel M., Kudsk P., Mesterhazy A., Sosnowska D., Zimnoch‐Guzowska E., Messéan A..
(2018)
Advocating a need for suitable breeding approaches to boost integrated pest management: a European perspective.Pest Management Science, 6 (74) 1219-1227
Laporte F.,
2018-03-13 13/03/18, Développement de méthodes statistiques pour l’identification de gènes d’intérêt en présence d’apparentement et de dominance, application à la génétique du maïs, PhD thesis, Université Paris-Saclay
Lorant A., Ross-Ibarra J., Tenaillon M., Dutheil JY..
(2018)
Genomics of long- and short- term adaptation in maize and teosintes.
, (accepted) in press
Lorant A.,
2018-03, Plasticity and genetic adaptation as contributors to the evolutionary history of cultivated maize and its wild relatives, Theses, Université Paris Saclay (COmUE)
Odonkor S., Choi S., Chakraborty D., Martinez-Bello L., Wang X., Bahri BA., Tenaillon M., Panaud O., Devos KM..
(2018)
QTL Mapping Combined With Comparative Analyses Identified Candidate Genes for Reduced Shattering in Setaria italica.Front. Plant Sci., (9)
Oury FX., Heumez E., Rolland B., Auzanneau J., Bérard P., Brancourt-Hulmel M., Charrier X., Chiron H., Depatureaux C., Falchetto L., Gardet O., Gilles S., Giraud A., Lecomte C., Jean-Yves Morlais ., Pluchard P., Tropée D., Trottet M., Walczak P., Doussinault G., Rousset M., Charmet G., Oury FX., Charmet G., Pommier C..
(2018)
Winter wheat (Triticum aestivum L) phenotypic data from the multiannual, multilocal field trials of the INRA Small Grain Cereals Network.
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Perronne R., Goldringer I..
(2018)
Application of a partitioning procedure based on Rao quadratic entropy index to characterize the temporal evolution of in situ varietal and genetic diversity of bread wheat in France over the period 1981–2006.Theor Appl Genet, 4 (131) 775-786
Raffoux X.,
2018-11, Diversité et déterminisme génétique de la recombinaison méiotique chez Saccharomyces cerevisiae, Theses, Université Paris Saclay (COmUE)
Raffoux X., Bourge M., Dumas F., Martin OC., Falque M..
(2018)
High-throughput measurement of recombination rates and genetic interference in Saccharomyces cerevisiae.Yeast, 6 (35) 431-442
Raffoux X., Bourge M., Dumas F., Martin OC., Falque M..
(2018)
Role of Cis, Trans, and Inbreeding Effects on Meiotic Recombination in Saccharomyces cerevisiae.Genetics, 4 (210) 1213-1226
Richard MMS., Gratias A., Thareau V., Kim KD., Balzergue S., Joets J., Jackson SA., Geffroy V..
(2018)
Genomic and epigenomic immunity in common bean: the unusual features of NB-LRR gene family.DNA Res, 2 (25) 161-172
Senghor Y., Guitard J., Angoulvant A., Hennequin C..
(2018)
Cryptococcal antigen detection in broncho-alveolar lavage fluid.Med Mycol, 6 (56) 774-777
van Frank G.,
2018-12, Gestion participative de la diversité cultivée et création de mélanges diversifiés de blé tendre à la ferme, Theses, Université Paris Saclay (COmUE)
2017
Adam-Blondon AF., Alaux M., Durand S., Letellier T., Merceron G., Mohellibi N., Pommier C., Steinbach D., Alfama F., Amselem J., Charruaud D., Choisne N., Flores R., Guerche C., Jamilloux V., Kimmel E., Lapalu N., Loaec M., Michotey C., Quesneville H., van Dijk ADJ..
(2017)
Mining Plant Genomic and Genetic Data Using the GnpIS Information System.
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Aguirre‐Liguori JA., Tenaillon M., Vázquez‐Lobo A., Gaut BS., Jaramillo‐Correa JP., Montes‐Hernandez S., Souza V., Eguiarte LE..
(2017)
Connecting genomic patterns of local adaptation and niche suitability in teosintes.Molecular Ecology, 16 (26) 4226-4240
Akakpo R., Scarcelli N., Chaïr H., Dansi A., Djedatin G., Thuillet AC., Rhoné B., François O., Alix K., Vigouroux Y..
(2017)
Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes.BMC Genomics, 1 (18) 782
Alix K., Gérard P., Schwarzacher T., Heslop-Harrison JSP..
(2017)
Polyploidy and interspecific hybridization: partners for adaptation, speciation and evolution in plants.Ann Bot, 2 (120) 183-194
Angoulvant A., ANOFEL ., Houzé S., Botterel-Chartier F..
(2017)
Examen mycologique des prélèvements respiratoires (chap 9).
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Baldy A., Jacquemot MP., Griveau Y., Bauland C., Reymond M., Mechin V..
(2017)
Energy Values of Registered Corn Forage Hybrids in France over the Last 20 Years Rose in a Context of Maintained Yield Increase.American Journal of Plant Sciences, (08) 1449
Barot S., Allard V., Cantarel A., Enjalbert J., Gauffreteau A., Goldringer I., Lata JC., Le Roux X., Niboyet A., Porcher E..
(2017)
Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review.Agron. Sustain. Dev., 2 (37) 13
Bedoya CA., Dreisigacker S., Hearne S., Franco J., Mir C., Prasanna BM., Taba S., Charcosset A., Warburton ML..
(2017)
Genetic diversity and population structure of native maize populations in Latin America and the Caribbean.PLoS One, 4 (12)
Bolotin-Fukuhara M..
(2017)
Thirty years of the HAP2/3/4/5 complex.Biochim Biophys Acta Gene Regul Mech, 5 (1860) 543-559
Bonnot T., Bancel E., Alvarez D., Davanture M., Boudet J., Pailloux M., Zivy M., Ravel C., Martre P..
(2017)
Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum.The Plant Journal, 5 (91) 894-910
Bouchet S., Bertin P., Presterl T., Jamin P., Coubriche D., Gouesnard B., Laborde J., Charcosset A..
(2017)
Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits.Heredity (Edinb), 3 (118) 249-259
Brandenburg JT., Mary-Huard T., Rigaill G., Hearne SJ., Corti H., Joets J., Vitte C., Charcosset A., Nicolas S., Tenaillon M..
(2017)
Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts.PLOS Genetics, 3 (13) e1006666
Brault V., Delattre M., Lebarbier E., Mary‐Huard T., Lévy‐Leduc C..
(2017)
Estimating the Number of Block Boundaries from Diagonal Blockwise Matrices Without Penalization.Scandinavian Journal of Statistics, 2 (44) 563-580
Bukreyeva I., Angoulvant A., Bendib I., Gagnard JC., Bourhis JH., Dargère S., Bonhomme J., Thellier M., Gachot B., Wyplosz B..
(2017)
Enterocytozoon bieneusi Microsporidiosis in Stem Cell Transplant Recipients Treated with Fumagillin1.Emerg Infect Dis, 6 (23) 1039-1041
Cañas RA., Yesbergenova-Cuny Z., Simons M., Chardon F., Armengaud P., Quilleré I., Cukier C., Gibon Y., Limami AM., Nicolas S., Brulé L., Lea PJ., Maranas CD., Hirel B..
(2017)
Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield.The Plant Cell, 5 (29) 919-943
Citerne HL., Reyes E., Le Guilloux M., Delannoy E., Simonnet F., Sauquet H., Weston PH., Nadot S., Damerval C..
(2017)
Characterization of CYCLOIDEA-like genes in Proteaceae, a basal eudicot family with multiple shifts in floral symmetry.Ann Bot, 3 (119) 367-378
Damerval C., Jabbour F., Nadot S., Citerne HL., Nuno de la Rosa L., Müller G..
(2017)
Evolution of symmetry in plants.
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Damerval C., Becker A..
(2017)
Genetics of flower development in Ranunculales – a new, basal eudicot model order for studying flower evolution.New Phytologist, 2 (216) 361-366
Damerval C., Nadot S..
(2017)
Letter to the 21st century botanist: “What is a flower?” 6. The evo-devo of floral symmetry.Botany Letters, 3 (164) 193-196
Delatola EI., Lebarbier E., Mary-Huard T., Radvanyi F., Robin S., Wong J..
(2017)
SegCorr a statistical procedure for the detection of genomic regions of correlated expression.BMC Bioinformatics, 1 (18) 333
Demeulenaere Élise., Rivière P., Hyacinthe A., Baltassat R., Baltazar S., Gascuel JS., Lacanette J., Montaz H., Pin S., Ranke O., Serpolay-Besson E., Thomas M., Frank GV., Vanoverschelde M., Vindras-Fouillet C., Goldringer I..
(2017)
La sélection participative à l’épreuve du changement d’échelle. À propos d’une collaboration entre paysans sélectionneurs et généticiens de terrain.Nat. Sci. Soc., 4 (25) 336-346
Demeulenaere Élise., Goldringer I..
(2017)
Semences et transition agroécologique : initiatives paysannes et sélection participative comme innovations de rupture.Nat. Sci. Soc., (25) S55-S59
Denis E., Kbiri N., Mary V., Claisse G., Conde E Silva N., Kreis M., Deveaux Y..
(2017)
WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.Plant J., 3 (90) 560-572
Duruflé H., Hervé V., Ranocha P., Balliau T., Zivy M., Chourré J., San Clemente H., Burlat V., Albenne C., Déjean S., Jamet E., Dunand C..
(2017)
Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study.Plant Science, (263) 183-193
Duruflé H., Clemente HS., Balliau T., Zivy M., Dunand C., Jamet E..
(2017)
Cell wall proteome analysis of Arabidopsis thaliana mature stems.PROTEOMICS, 8 (17) 1600449
Duruflé H., Hervé V., Balliau T., Zivy M., Dunand C., Jamet E..
(2017)
Proline Hydroxylation in Cell Wall Proteins: Is It Yet Possible to Define Rules?.Front. Plant Sci., (8)
Fustier MA., Brandenburg JT., Boitard S., Lapeyronnie J., Eguiarte LE., Vigouroux Y., Manicacci D., Tenaillon M..
(2017)
Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples.Molecular Ecology, 10 (26) 2738-2756
Galland M., He D., Lounifi I., Arc E., Clément G., Balzergue S., Huguet S., Cueff G., Godin B., Collet B., Granier F., Morin H., Tran J., Valot B., Rajjou L..
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An Integrated “Multi-Omics” Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality.Front Plant Sci, (8)
Giraud H., Bauland C., Falque M., Madur D., Combes V., Jamin P., Monteil C., Laborde J., Palaffre C., Gaillard A., Blanchard P., Charcosset A., Moreau L..
(2017)
Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.).G3: Genes, Genomes, Genetics, g3.300121.2017
Giraud H., Bauland C., Falque M., Madur D., Combes V., Jamin P., Monteil C., Laborde J., Palaffre C., Gaillard A., Blanchard P., Charcosset A., Moreau L..
(2017)
Reciprocal Genetics: Identifying QTL for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups.Genetics, 3 (207) 1167-1180
Gouesnard B., Negro S., Laffray A., Glaubitz J., Melchinger A., Revilla P., Moreno-Gonzalez J., Madur D., Combes V., Tollon-Cordet C., Laborde J., Kermarrec D., Bauland C., Moreau L., Charcosset A., Nicolas S..
(2017)
Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank.Theor Appl Genet, 10 (130) 2165-2189
Henry VJ., Saïs F., Marchadier É., Dibie J., Goelzer A., Fromion V..
(2017)
BiPOm: Biological interlocked Process Ontology for metabolism. How to infer molecule knowledge from biological process?.
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Jean N., Dumont E., Herzi F., Balliau T., Laabir M., Masseret E., Mounier S..
(2017)
Modifications of the soluble proteome of a mediterranean strain of the invasive neurotoxic dinoflagellate Alexandrium catenella under metal stress conditions.Aquatic Toxicology, (188) 80-91
Langella O., Valot B., Balliau T., Blein-Nicolas M., Bonhomme L., Zivy M..
(2017)
X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification.J. Proteome Res., 2 (16) 494-503
Laporte F., Charcosset A., Mary‐Huard T..
(2017)
Estimation of the relatedness coefficients from biallelic markers, application in plant mating designs.Biometrics, 3 (73) 885-894
Larièpe A., Moreau L., Laborde J., Bauland C., Mezmouk S., Décousset L., Mary-Huard T., Fiévet J., Gallais A., Dubreuil P., Charcosset A..
(2017)
General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents.Theor. Appl. Genet., 2 (130) 403-417
Lecarpentier C.,
2017-01, Plasticité de l'architecture aérienne du blé en réponse à la compétition pour la lumière au sein de cultures pures ou d'associations variétales : caractérisation expérimentale et développement d'un modèle 3D, Theses, Université Paris Saclay (COmUE)
Lecarpentier C.,
2017-01-25 25/01/17, Valorisation de la diversité intra-parcelle dans un contexte de changement climatique. Développement d'un modèle couplant écophysiologie 3D et génétique évolutive., PhD thesis, Université Paris-Saclay
Mary-Huard T.,
2017-06-12 06/12/17, Some contributions to statistical modeling and model selection with applications to genomics and quantitative genetics, HDR, Université Paris Sud
Millan-Oropeza A., Henry C., Blein-Nicolas M., Aubert-Frambourg A., Moussa F., Bleton J., Virolle MJ..
(2017)
Quantitative Proteomics Analysis Confirmed Oxidative Metabolism Predominates in Streptomyces coelicolor versus Glycolytic Metabolism in Streptomyces lividans.J. Proteome Res., 7 (16) 2597-2613
Moreau L.,
2017-06-13 13/06/17, Utilisation des marqueurs en sélection : des QTL à la Sélection Génomique, HDR, Université Paris Sud
Negroni L., Zivy M., Lemaire C., Lacapere JJ..
(2017)
Mass Spectrometry of Mitochondrial Membrane Protein Complexes.
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Ousseini IS., Bakasso Y., Kane NA., Couderc M., Zekraoui L., Mariac C., Manicacci D., Rhoné B., Barnaud A., Berthouly-Salazar C., Assoumane A., Moussa D., Moussa T., Vigouroux Y..
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Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet.Heredity, 2 (119) 88-94
Pelé A., Falque M., Trotoux G., Eber F., Nègre S., Gilet M., Huteau V., Lodé M., Jousseaume T., Dechaumet S., Morice J., Poncet C., Coriton O., Martin OC., Rousseau-Gueutin M., Chèvre AM..
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Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas.PLoS Genet, 5 (13)
Perronne R., Diguet S., Vallavieille-Pope C., Leconte M., Enjalbert J..
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A framework to characterize the commercial life cycle of crop varieties: Application to the case study of the influence of yellow rust epidemics on French bread wheat varieties.Field Crops Research, (209) 159-167
Perronne R., Makowski D., Goffaux R., Montalent P., Goldringer I..
(2017)
Temporal evolution of varietal, spatial and genetic diversity of bread wheat between 1980 and 2006 strongly depends upon agricultural regions in France.Agriculture, Ecosystems & Environment, (236) 12-20
Regente M., Pinedo M., San Clemente H., Balliau T., Jamet E., de la Canal L..
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Plant extracellular vesicles are incorporated by a fungal pathogen and inhibit its growth.J Exp Bot, 20 (68) 5485-5495
Renvoisé M., Bonhomme L., Davanture M., Zivy M., Lemaire C., Tan AC., Huang PH..
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Phosphoproteomic Analysis of Isolated Mitochondria in Yeast.
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Rincent R., Charcosset A., Moreau L..
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Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations.Theor Appl Genet, 11 (130) 2231-2247
Rouzet A., Reboux G., Dalphin JC., Gondouin A., De Vuyst P., Balliau T., Millon L., Valot B., Roussel S..
(2017)
An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung.Journal of Immunological Methods, (450) 58-65
Samal A., Martin OC..
(2017)
Haldane, Waddington and recombinant inbred lines: extension of their work to any number of genes.J. Genet., 5 (96) 795-800
Villegente M., Marmey P., Job C., Galland M., Cueff G., Godin B., Rajjou L., Balliau T., Zivy M., Fogliani B., Sarramegna-Burtet V., Job D..
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A Combination of Histological, Physiological, and Proteomic Approaches Shed Light on Seed Desiccation Tolerance of the Basal Angiosperm Amborella trichopoda.Proteomes, 3 (5)
2016
Ali S., Soubeyrand S., Gladieux P., Giraud T., Leconte M., Gautier A., Mboup M., Chen X., Vallavieille‐Pope C., Enjalbert J..
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cloncase: Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms.Molecular Ecology Resources, 4 (16) 845-861
Angoulvant A., Guitard J., Hennequin C..
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Old and new pathogenic Nakaseomyces species: epidemiology, biology, identification, pathogenicity and antifungal resistance.FEMS Yeast Res, 2 (16)
Berthouly‐Salazar C., Thuillet AC., Rhoné B., Mariac C., Ousseini IS., Couderc M., Tenaillon M., Vigouroux Y..
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Genome scan reveals selection acting on genes linked to stress response in wild pearl millet.Molecular Ecology, 21 (25) 5500-5512
Blein-Nicolas M., Zivy M..
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Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics.Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 8 (1864) 883-895
Bolotin-Fukuhara M., Fairhead C..
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Editorial: Candida glabrata, the other yeast pathogen.FEMS Yeast Res, 2 (16)
Bougnoux ME., Dannaoui E., Accoceberry I., Angoulvant A., Bailly E., Botterel F., Chevrier S., Chouaki T., Cornet M., Dalle F., Datry A., Dupuis A., Fekkar A., Gangneux JP., Guitard J., Hennequin C., Le Govic Y., Le Pape P., Maubon D., Ranque S., Sautour M., Sendid B., Chandenier J..
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Multicenter Comparison of the Etest and EUCAST Methods for Antifungal Susceptibility Testing of Candida Isolates to Micafungin.Antimicrob Agents Chemother, 8 (60) 5088-5091
Boutet G., Alves Carvalho S., Falque M., Peterlongo P., Lhuillier E., Bouchez O., Lavaud C., Pilet-Nayel ML., Rivière N., Baranger A..
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SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population.BMC Genomics, (17)
Cossard G., Sannier J., Sauquet H., Damerval C., de Craene LR., Jabbour F., Nadot S..
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Subfamilial and tribal relationships of Ranunculaceae: evidence from eight molecular markers.Plant Syst Evol, 4 (302) 419-431
Desclée de Maredsous C., Oozeer R., Barbillon P., Mary-Huard T., Delteil C., Blachier F., Tomé D., van der Beek EM., Davila AM..
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High-Protein Exposure during Gestation or Lactation or after Weaning Has a Period-Specific Signature on Rat Pup Weight, Adiposity, Food Intake, and Glucose Homeostasis up to 6 Weeks of Age.J. Nutr., 1 (146) 21-29
Dobrenel T., Mancera-Martínez E., Forzani C., Azzopardi M., Davanture M., Moreau L., Schepetilnikov M., Chicher J., Langella O., Zivy M., Robaglia C., Ryabova LA., Hanson J., Meyer C..
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The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6.Front Plant Sci, (7)
Durand JL., Andrieu B., Barillot R., Barre P., Combes V., Enjalbert J., Escobar-Gutierrez A., Faverjon L., Lecarpentier C., Litrico I., Louarn G., Migault V., Sanchez D..
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Designing and improving mixed grasslands: advances made in modelling forage variety performance.Fourrages, 225 21-28
Enjalbert J.,
2016-01-13 13/01/16, De la génétique des clones à l'agroécologie, HDR, Université Paris-Sud
Enjalbert J., Allard V., Andrieu B., Barot S., Borg J., Cantarel A., Feret M., Cervek C., Coleno FC., Pope De Vallavieille C., Descoureaux D., Dubs F., Galic N., Gauffreteau A., Gilet JD., Goldringer I., Hannachi M., Houivet G., Pin S., Jeuffroy MH., Kerbiriou C., Labarthe P., LATA JC., LeCarpentier C., Lejars L., Lemain B., Lemarié S., Leny F., Le Roux X., Le Viol I., Montagnier C., NIBOYET A., Omon B., Piaud S., Poly F., Pommier T., Porcher E., Saint-Jean S., Salmon S., Tropée D., Vidal T..
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Increasing species richness and genetic diversity in agriculture: results of the Wheatamix project.
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Fernandez O., Urrutia M., Bernillon S., Giauffret C., Tardieu F., Le Gouis J., Langlade N., Charcosset A., Moing A., Gibon Y..
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Fortune telling: metabolic markers of plant performance.Metabolomics, 10 (12) 158
Fiume E., Guyon V., Remoué C., Magnani E., Miquel M., Grain D., Lepiniec L..
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TWS1, a Novel Small Protein, Regulates Various Aspects of Seed and Plant Development1[OPEN].Plant Physiol, 3 (172) 1732-1745
Friggens NC., Duvaux-Ponter C., Etienne MP., Mary-Huard T., Schmidely P..
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Characterizing individual differences in animal responses to a nutritional challenge: Toward improved robustness measures.Journal of Dairy Science, 4 (99) 2704-2718
Fustier MA.,
2016-06, Adaptation locale des téosintes Zea mays ssp. parviglumis et Zea mays ssp. mexicana le long de gradients altitudinaux, Theses, Université Paris Saclay (COmUE)
Fustier MA.,
2016-06-16 16/06/16, Adaptation locale des téosintes Zea mays ssp. parviglumis et Zea mays ssp. mexicana le long de gradients altitudinaux, PhD thesis, Université Paris-Sud
Giraud H.,
2016-01, Genetic analysis of hybrid value for silage maize in multiparental designs : QTL detection and genomic selection, Theses, Université Paris Saclay (COmUE)
Hazard L., Gauffreteau A., Borg J., Charron MH., Deo M., Enjalbert J., Goutiers V., Gressier E..
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Using innovative approaches to meet the challenges of a rapidly changing climate and world: the utility of co-design in plant breeding programmes.Fourrages, 225 39-47
Henry A., Martin OC..
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Short relaxation times but long transient times in both simple and complex reaction networks.Journal of the Royal Society, Interface / the Royal Society, 120 (13)
Herve V., Durufle H., San Clemente H., Albenne C., Balliau T., Zivy M., Dunand C., Jamet E..
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An enlarged cell wall proteome of Arabidopsis thaliana rosettes.Proteomics, 24 (16) 3183-3187
Hosseini SR., Martin OC., Wagner A..
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Phenotypic innovation through recombination in genome-scale metabolic networks.Proceedings. Biological sciences, 1839 (283)
Jacques N., Sarilar V., Urien C., Lopes MR., Morais CG., Uetanabaro AP., Tinsley CR., Rosa CA., Sicard D., Casaregola S..
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Three novel ascomycetous yeast species of the Kazachstania clade, Kazachstania saulgeensis sp. nov., Kazachstania serrabonitensis sp. nov. and Kazachstania australis sp. nov. Reassignment of Candida humilis to Kazachstania humilis f.a. comb. nov. and Candida pseudohumilis to Kazachstania pseudohumilis f.a. comb. nov.International journal of systematic and evolutionary microbiology, 12 (66) 5192-5200
Labeyrie V., Thomas M., Muthamia ZK., Leclerc C..
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Seed exchange networks, ethnicity, and sorghum diversity.Proceedings of the National Academy of Sciences of the United States of America, 1 (113) 98-103
Legrand J., Bolotin-Fukuhara M., Bourgais A., Fairhead C., Sicard D..
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Life-history strategies and carbon metabolism gene dosage in the Nakaseomyces yeasts.FEMS yeast research, 2 (16) fov112
Levy M., Pham LL., Faye A., de Suremain N., Rambaud J., Angoulvant A., Miatello J., Dauger S., Naudin J..
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Parenteral Artesunate for Severe Imported Plasmodium falciparum Malaria in Children.The Pediatric infectious disease journal, 9 (35) 1053-4
Lhomme E., Urien C., Legrand J., Dousset X., Onno B., Sicard D..
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Sourdough microbial community dynamics: An analysis during French organic bread-making processes.Food Microbiology, Pt A (53) 41-50
Martin OC., Krzywicki A., Zagorski M..
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Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function.Physics of life reviews, (17) 124-58
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Superheroes and masterminds of plant domestication.Comptes rendus biologies, 7-8 (339) 268-73
Millet E., Welcker C., Kruijer W., Negro S., Nicolas S., Coupel-Ledru A., Bauland C., Praud S., Ranc N., Presterl T., Tuberosa R., Bedo Z., Draye X., Usadel B., Charcosset A., van Eeuwijk F., Tardieu F..
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Genome-wide analysis of yield in Europe: allelic effects as functions of drought and heat scenarios.Plant physiology, 2 (172) 749-764
Moreau L., Charmet G., Charcosset A., Le Gouis J., Deretz S..
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Quelle place pour la selection génomique chez les espèces de grande culture ?.
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Mori M., Hwa T., Martin OC., De Martino A., Marinari E..
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Constrained Allocation Flux Balance Analysis.PLoS computational biology, 6 (12) e1004913
Naino Jika AK.,
2016-07, Flux de gènes et évolution des ressources génétiques du mil (Pennisetum glaucum) dans le Bassin du Lac Tchad : rôle de la diversité socio-culturelle, Theses, Université Paris Saclay (COmUE) ; Université Abdou Moumouni
Nguyen-Kim H., San Clemente H., Balliau T., Zivy M., Dunand C., Albenne C., Jamet E..
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Arabidopsis thaliana root cell wall proteomics: Increasing the proteome coverage using a combinatorial peptide ligand library and description of unexpected Hyp in peroxidase amino acid sequences.Proteomics, 3 (16) 491-503
Nicolas S., Peros JP., Lacombe T., Launay A., Le Paslier MC., Berard A., Mangin B., Valiere S., Martins F., Le Cunff L., Laucou V., Bacilieri R., Dereeper A., Chatelet P., This P., Doligez A..
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Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies.BMC plant biology, 1 (16) 74
Perronne R., Hannachi M., Lemarié S., Fugeray-Scarbel A., Goldringer I..
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L’évolution de la filière blé tendre en France entre 1980 et 2006: quelle influence sur la diversité cultivée ?.Notes et Etudes Socio-Economiques (NESE), (41) 83-113
Reboud X., Sicard D., Bataillon T., Bedhomme S., Dillmann C., Gaba S., Gallet R., Guidot A., Goldringer I., Jasmin JN., Kaltz O., Méry F., Nidelet T., Schneider D., Spor A., Thomas F., Raymond M., Lefevre T..
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Évolution expérimentale.
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Revilla P., Rodriguez VM., Ordas A., Rincent R., Charcosset A., Giauffret C., Melchinger AE., Schon CC., Bauer E., Altmann T., Brunel D., Moreno-Gonzalez J., Campo L., Ouzunova M., Alvarez A., Ruiz de Galarreta JI., Laborde J., Malvar RA..
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Association mapping for cold tolerance in two large maize inbred panels.BMC plant biology, 1 (16) 127
Roux F., Mary-Huard T., Barillot E., Wenes E., Botran L., Durand S., Villoutreix R., Martin-Magniette ML., Camilleri C., Budar F..
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Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field.Proceedings of the National Academy of Sciences of the United States of America, 13 (113) 3687-92
Sabarly V., Aubron C., Glodt J., Balliau T., Langella O., Chevret D., Rigal O., Bourgais A., Picard B., de Vienne D., Denamur E., Bouvet O., Dillmann C..
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Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates.Environmental microbiology, 1 (18) 100-17
Solano J., Acuña I., Chauvin JE., Brabant P..
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In-Vitro Evaluation of Resistance to Late Blight (Phytophthora infestans Mont. De Bary.) in Solanum Accessions Native to Chile, by Inoculation of Detached Leaflets.Am J Pl Sci, 3 (7) 581-589
Tenaillon M., Manicacci D., Nicolas S., Tardieu F., Welcker C..
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Testing the link between genome size and growth rate in maize.PeerJ, (4) e2408
Thomas M., Caillon S..
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Effects of farmer social status and plant biocultural value on seed circulation networks in Vanuatu.Ecol Soc, 2 (21) 13
Violon C., Thomas M., Garine E..
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Good year, bad year: changing strategies, changing networks? A two-year study on seed acquisition in northern Cameroon.Ecol Soc, 2 (21) 34
Walter S., Ali S., Kemen E., Nazari K., Bahri BA., Enjalbert J., Hansen JG., Brown JK., Sicheritz-Ponten T., Jones J., de Vallavieille-Pope C., Hovmoller MS., Justesen AF..
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Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis.Ecology and evolution, 9 (6) 2790-804
Wencélius J., Thomas M., Barbillon P., Garine E..
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Interhousehold variability and its effects on seed circulation networks: a case study from northern Cameroon.Ecol Soc, 1 (21) 44
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Angoulvant A., Stern JB., Wittnebel S., Bourhis JH., Gachot B., Vittecoq D., Wyplosz B..
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Photo quiz. Dyspnea and fever in an allogeneic stem cell recipient.Clin. Infect. Dis., 1 (60) 100, 157-158
Badouin H., Hood ME., Gouzy J., Aguileta G., Siguenza S., Perlin MH., Cuomo CA., Fairhead C., Branca A., Giraud T..
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Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae.Genetics, 4 (200) 1275-1284
Bancel E., Bonnot T., Davanture M., Branlard G., Zivy M., Martre P..
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Proteomic Approach to Identify Nuclear Proteins in Wheat Grain.J. Proteome Res., 10 (14) 4432-4439
Barbillon P., Thomas M., Goldringer I., Hospital F., Robin S..
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Network impact on persistence in a finite population dynamic diffusion model: application to an emergent seed exchange network.J. Theor. Biol., (365) 365-376
Bel L., Daudin JJ., Etienne M., Lebarbier E., Mary-Huard T., Robin S., Vuillet C., Daudin JJ..
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Modèle mixte, modélisation de la variance.
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Plans d’expérience.
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Blein-Nicolas M., Albertin W., da Silva T., Valot B., Balliau T., Masneuf-Pomarède I., Bely M., Marullo P., Sicard D., Dillmann C., de Vienne D., Zivy M..
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A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast.Mol. Cell Proteomics, 8 (14) 2056-2071
Boisnard S., Zhou Li Y., Arnaise S., Sequeira G., Raffoux X., Enache-Angoulvant A., Bolotin-Fukuhara M., Fairhead C..
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Efficient Mating-Type Switching in Candida glabrata Induces Cell Death.PLoS ONE, 10 (10) e0140990
Chapeland-Leclerc F., Dilmaghani A., Ez-Zaki L., Boisnard S., Da Silva B., Gaslonde T., Poree FH., Ruprich-Robert G..
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Systematic gene deletion and functional characterization of histidine kinase phosphorelay receptors (HKRs) in the human pathogenic fungus Aspergillus fumigatus.Fungal Genet. Biol., (84) 1-11
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Floral vascular patterns of the double-flowered and wild-type morphs of Nigella damascena L. (Ranunculaceae).Modern Phytomorphology, (7) 13-20
Desclée de Maredsous C., Oosting A., Delteil C., Blachier F., Barbillon P., Mary-Huard T., Tome D., Oozeer R., Davila AM..
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High-Protein Diet during Gestation Promotes Adiposity and Food Intake in Female Rat Pups in the Longer Term.Faseb J., 1 (29)
Durand E., Tenaillon M., Raffoux X., Thépot S., Falque M., Jamin P., Bourgais A., Ressayre A., Dillmann C..
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Dearth of polymorphism associated with a sustained response to selection for flowering time in maize.BMC Evol Biol, 1 (15) 103
Falque M.,
2015-10-15 15/10/15, Sur les traces de la recombinaison méiotique, source de biodiversité et outil génétique, HDR, Université Paris-Sud
Gaba S., Lescourret F., Boudsocq S., Enjalbert J., Hinsinger P., Journet EP., Navas ML., Wery J., Louarn G., Malezieux E., Pelzer E., Prudent M., Ozier-Lafontaine H..
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Multiple cropping systems as drivers for providing multiple ecosystem services: from concepts to design.Agron Sustain Dev, 2 (35) 607-623
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Pour comprendre l'amélioration des plantes. Enjeux, méthodes, objectifs et critères de sélection.
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Grigolon S., Sollich P., Martin OC..
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Modelling the emergence of polarity patterns for the intercellular transport of auxin in plants.Journal of the Royal Society, Interface / the Royal Society, 106 (12)
Guitard J., Atanasova R., Brossas JY., Meyer I., Gits M., Marinach C., Vellaissamy S., Angoulvant A., Mazier D., Hennequin C..
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Candida inconspicua and Candida norvegensis: new insights into identification in relation to sexual reproduction and genome organization.Journal of clinical microbiology, 5 (53) 1655-61
Henry A.,
2015-12, Kinetic models of metabolism: model construction, model analysis and biotechnological applications, Theses, Université Paris Diderot
Henry A.,
2015-12-17 17/12/15, Modélisation cinétique du métabolisme : construction du modèle, analyse et applications biotechnologiques, PhD thesis, Université Paris Diderot - Paris 7
Hummel M., Dobrenel T., Cordewener JJ., Davanture M., Meyer C., Smeekens SJ., Bailey-Serres J., America TA., Hanson J..
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Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes.Journal of proteomics, (128) 436-49
Jabbour F., Udron M., Le Guilloux M., Goncalves B., Manicacci D., Nadot S., Damerval C..
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Flower development schedule and AGAMOUS-like gene expression patterns in two morphs of Nigella damascena (Ranunculaceae) differing in floral architecture.Bot J Linn Soc, 4 (178) 608-619
Jabbour F., Nadot S., Espinosa F., Damerval C..
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Ranunculacean flower terata: Records, a classification, and some clues about floral developmental genetics and evolution.Flora, (217) 64-74
Jaureguiberry S., Thellier M., Ndour PA., Ader F., Roussel C., Sonneville R., Mayaux J., Matheron S., Angoulvant A., Wyplosz B., Rapp C., Pistone T., Lebrun-Vignes B., Kendjo E., Danis M., Houze S., Bricaire F., Mazier D., Buffet P., Caumes E..
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Delayed-onset hemolytic anemia in patients with travel-associated severe malaria treated with artesunate, France, 2011-2013.Emerging infectious diseases, 5 (21) 804-12
Lanternier F., Barbati E., Meinzer U., Liu L., Pedergnana V., Migaud M., Heritier S., Chomton M., Fremond ML., Gonzales E., Galeotti C., Romana S., Jacquemin E., Angoulvant A., Bidault V., Canioni D., Lachenaud J., Mansouri D., Mahdaviani SA., Adimi P., Mansouri N., Jamshidi M., Bougnoux ME., Abel L., Lortholary O., Blanche S., Casanova JL., Picard C., Puel A..
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Inherited CARD9 deficiency in 2 unrelated patients with invasive Exophiala infection.The Journal of infectious diseases, 8 (211) 1241-50
Legrand J., Temime L., Lawrence C., Herrmann JL., Boelle PY., Guillemot D..
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Occupational Determinants of Methicillin-Resistant Staphylococcus aureus Colonization Among Healthcare Workers: A Longitudinal Study in a Rehabilitation Center.Infect. Control Hosp. Epidemiol., 7 (36) 767-776
Obadia T., Silhol R., Opatowski L., Temime L., Legrand J., Thiebaut AC., Herrmann JL., Fleury E., Guillemot D., Boelle PY..
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Detailed Contact Data and the Dissemination of Staphylococcus aureus in Hospitals.PLoS computational biology, 3 (11) e1004170
Osborne AJ., Pearson J., Negro SS., Chilvers BL., Kennedy MA., Gemmell NJ..
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Heterozygote advantage at MHC DRB may influence response to infectious disease epizootics.Molecular ecology, 7 (24) 1419-32
Oury FX., Lasme P., Michelet C., Rousset M., Abecassis J., Lullien-Pellerin V..
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Relationships between wheat grain physical characteristics studied through near-isogenic lines with distinct puroindoline-b allele.Theor Appl Genet, 5 (128) 913-29
Poncet V., Scutt C., Tournebize R., Villegente M., Cueff G., Rajjou L., Balliau T., Zivy M., Fogliani B., Job C., de Kochko A., Sarramegna-Burtet V., Job D..
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The Amborella vacuolar processing enzyme family.Frontiers in plant science, (6) 618
Ressayre A., Glemin S., Montalent P., Serre-Giardi L., Dillmann C., Joets J..
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Introns Structure Patterns of Variation in Nucleotide Composition in Arabidopsis thaliana and Rice Protein-Coding Genes.Genome biology and evolution, 10 (7) 2913-28
Rivet-Danon D., Guitard J., Grenouillet F., Gay F., Ait-Ammar N., Angoulvant A., Marinach C., Hennequin C..
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Rapid diagnosis of cryptococcosis using an antigen detection immunochromatographic test.The Journal of infection, 5 (70) 499-503
Rivière P., Dawson JC., Goldringer I., David O..
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Hierarchical Bayesian Modeling for Flexible Experiments in Decentralized Participatory Plant Breeding.Crop Science, 3 (55) 1053-1067
Rivière P., Goldringer I., Berthellot JF., Galic N., Pin S., Kochko PD., Dawson JC..
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Response to farmer mass selection in early generation progeny of bread wheat landrace crosses.Renewable Agriculture and Food Systems, 2 (30) 190-201
Rousselle Y., Jones E., Charcosset A., Moreau L., Robbins K., Stich B., Knaak C., Flament P., Karaman Z., Martinant JP., Fourneau M., Taillardat A., Romestant M., Tabel C., Bertran J., Ranc N., Lespinasse D., Blanchard P., Kahler A., Chen X., Kahler J., Dobrin S., Warner T., Ferris R., Smith S..
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Study on Essential Derivation in Maize: III. Selection and Evaluation of a Panel of Single Nucleotide Polymorphism Loci for Use in European and North American Germplasm.Crop Science, 3 (55) 1170-1180
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Statistical Physics Methods Provide the Exact Solution to a Long-Standing Problem of Genetics.Phys. Rev. Lett., 23 (114) 238101
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Zygomorphy evolved from disymmetry in Fumarioideae (Papaveraceae, Ranunculales): new evidence from an expanded molecular phylogenetic framework.Ann Bot, 6 (115) 895-914
Sidhu GK., Fang C., Olson MA., Falque M., Martin OC., Pawlowski WP..
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Recombination patterns in maize reveal limits to crossover homeostasis.PNAS, 52 (112) 15982-15987
Tayeh N., Aluome C., Falque M., Jacquin F., Klein A., Chauveau A., Bérard A., Houtin H., Rond C., Kreplak J., Boucherot K., Martin C., Baranger A., Pilet‐Nayel ML., Warkentin TD., Brunel D., Marget P., Paslier MCL., Aubert G., Burstin J..
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Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map.The Plant Journal, 6 (84) 1257-1273
Thomas M., Verzelen N., Barbillon P., Coomes OT., Caillon S., McKey D., Elias M., Garine E., Raimond C., Dounias E., Jarvis D., Wencélius J., Leclerc C., Labeyrie V., Cuong PH., Hue Ngoc NT., Sthapit B., Rana RB., Barnaud A., Violon C., Arias RE., Latournerie Moreno L., De Santis P., Massol F., Woodward G., Bohan DA..
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A Network-Based Method to Detect Patterns of Local Crop Biodiversity: Validation at the Species and Infra-Species Levels.
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Thomas M., Thépot S., Galic N., Jouanne‐Pin S., Remoué C., Goldringer I..
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Diversifying mechanisms in the on-farm evolution of crop mixtures.Molecular Ecology, 12 (24) 2937-2954
Thépot S., Restoux G., Goldringer I., Hospital F., Gouache D., Mackay I., Enjalbert J..
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Efficiently Tracking Selection in a Multiparental Population: The Case of Earliness in Wheat.Genetics, 2 (199) 609-623
Thépot S., Restoux G., Hospital F., Gouache D., Mackay I., Goldringer I., Enjalbert J., Ogihara Y., Takumi S., Handa H..
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Interest of a Multiparental and Outcrossing Wheat Population for Fine Mapping.
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Urien C.,
2015-01, Diversité des espèces de levures dans des levains naturels français produits à partir de farine issue de l'Agriculture Biologique : une étude pilote pour analyser les pratiques boulangères et les patterns des communautés microbiennes, Theses, Université Paris Sud - Paris XI
Zaag R., Tamby JP., Guichard C., Tariq Z., Rigaill G., Delannoy E., Renou JP., Balzergue S., Mary-Huard T., Aubourg S., Martin-Magniette ML., Brunaud V..
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GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response.Nucleic Acids Res, D1 (43) D1010-D1017
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The quest for tolerant varieties: the importance of integrating “omics” techniques to phenotyping.Front. Plant Sci., (6)
da Silva T., Albertin W., Dillmann C., Bely M., la Guerche S., Giraud C., Huet S., Sicard D., Masneuf-Pomarede I., de Vienne D., Marullo P..
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Hybridization within Saccharomyces Genus Results in Homoeostasis and Phenotypic Novelty in Winemaking Conditions.PloS one, 5 (10) e0123834
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Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies.BioMed research international, (2015) 904541
