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Génétique Quantitative et Évolution - Le Moulon

Publications

2021

  • Arca M., Mary-Huard T. , Gouesnard B., Bérard A., Bauland C. , Combes V. , Madur D. , Charcosset A. , Nicolas S. . (2021) Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array. Front. Plant Sci., (11) 568699
  • Balliau T. , Duruflé H., Blanchet N., Blein-Nicolas M. , Langlade NB., Zivy M. . (2021) Proteomic data from leaves of twenty-four sunflower genotypes under water deficit. OCL, (28) 12
  • Barrera-Redondo, J. ., Sanchez-de la Vega, G., Aguirre-Liguori, J.A., Castellanos-Morales, G., Gutierrez-Guerrero, Y.T., Aguirre-Dugua, X., Montes-Hernandez, S., Aguirre-Planter, E., Tenaillon, M.I., Lira-Saade, R., Eguiarte, L.E.. (2021) The sequence of a wild Cucurbita genome brings new insights into one of the earliest domestication in Mesoamerica. Horticultural Research, (8) 109
  • Bassignani A., Plancade S., Berland M., Blein-Nicolas M. , Guillot A., Chevret D., Moritz C., Huet S., Rizkalla S., Clément K., Doré J., Langella O. , Juste C.. (2021) Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets. J. Proteome Res.,
  • Bina H., Yousefzadeh H., Venon A. , Remoué C. , Rousselet A. , Falque M. , Faramarzi S., Chen X. , Samanchina J., Gill D., Kabaeva A., Giraud T., Hossainpour B., Abdollahi H., Gabrielyan I., Nersesyan A., Cornille A. . (2021) Evidence of an additional center of apple domestication in Iran, with contributions from the Caucasian crab apple. bioRxiv, 2021.03.28.437401
  • Blanc E. , Barbillon P., Fournier C., Lecarpentier C., Pradal C., Enjalbert J. . (2021) Functional–Structural Plant Modeling Highlights How Diversity in Leaf Dimensions and Tillering Capability Could Promote the Efficiency of Wheat Cultivar Mixtures. Front. Plant Sci., (12) 734056
  • Blanc E. , 12 mars 2021, Modélisation des conséquences évolutives de la compétition pour la lumière dans des populations composites de blé
  • Bossche TVD., Kunath BJ., Schallert K., Schäpe SS., Abraham PE., Armengaud J., Arntzen M., Bassignani A., Benndorf D., Fuchs S., Giannone RJ., Griffin TJ., Hagen LH., Halder R., Henry C., Hettich RL., Heyer R., Jagtap P., Jehmlich N., Jensen M., Juste C., Kleiner M., Langella O. , Lehmann T., Leith E., May P., Mesuere B., Miotello G., Peters SL., Pible O., Reichl U., Renard BY., Schiebenhoefer H., Scryba A., Tanca A., Trappe K., Trezzi JP., Uzzau S., Verschaffelt P., Bergen M., Wilmes P., Wolf M., Martens L., Muth T.. (2021) Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows. bioRxiv, 2021.03.05.433915
  • Brault C., Doligez A., Cunff L., Coupel-Ledru A., Simonneau T., Chiquet J., This P., Flutre T. , Jannink JL.. (2021) Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine. G3 Genes|Genomes|Genetics, 9 (11) jkab248
  • Brisou G., Piquerez SJM., Minoia S., Marcel F., Cornille A. , Carriero F., Boualem A., Bendahmane A.. (2021) Induced mutations in SlE8 and SlACO1 control tomato fruit maturation and shelf-life. Journal of Experimental Botany, erab330
  • Chen X. , Cornille A. , An N., Xing L., Ma J., Zhao C., Wang Y., Han M., Zhang D.. (2021) The Siberian wild apple is an additional contributor to the genome of the cultivated European and Chinese apple. bioRxiv,
  • Coton C. , Talbot G., Le Louarn M., Dillmann C. , de Vienne D. . (2021) Evolution of enzyme levels in metabolic pathways: A theoretical approach. bioRxiv,
  • Cui J., Davanture M. , Lamade E., Zivy M. , Tcherkez G.. (2021) Plant low-K responses are partly due to Ca prevalence and the low-K biomarker putrescine does not protect from Ca side effects but acts as a metabolic regulator. Plant Cell Environ, 5 (44) 1565-1579
  • David O., Le Rouzic A., Dillmann C. . (2021) Optimization of sampling designs for pedigrees and association studies. Biometrics,
  • Denoirjean T., Doury G., Cornille A. , Chen X. , Hance T., Ameline A.. (2021) Genetic structure of Malus sylvestris and potential link with preference/performance by the rosy apple aphid pest Dysaphis plantaginea. Scientific Reports, 1 (11) 5732
  • Deveaux Y. , Conde E Silva N. , Manicacci D. , Le Guilloux M. , Brunaud V., Belcram H. , Joets J. , Soubigou-Taconnat L., Delannoy E., Corti H., Balzergue S., Caius J., Nadot S., Damerval C. . (2021) Transcriptome Analysis Reveals Putative Target Genes of APETALA3-3 During Early Floral Development in Nigella damascena L.. Front. Plant Sci., (12) 660803
  • Diaw Y., Tollon-Cordet C., Charcosset A. , Nicolas S. , Madur D. , Ronfort J., David J., Gouesnard B., Chiang TY.. (2021) Genetic diversity of maize landraces from the South-West of France. PLoS ONE, 2 (16) e0238334
  • Douché T., Valot B., Balliau T. , San Clemente H., Zivy M. , Jamet E.. (2021) Cell wall proteomic datasets of stems and leaves of Brachypodium distachyon. Data in Brief, (35) 106818
  • Gonzàlez-Diéguez D., Legarra A., Charcosset A. , Moreau L. , Lehermeier C., Teyssèdre S., Vitezica ZG.. (2021) Genomic Prediction of Hybrid Crops Allows Disentangling Dominance and Epistasis. Genetics, iyab026
  • Groppi A., Liu S., Cornille A. , Decroocq S., Decroocq D.. (2021) Population genomics of apricots unravels domestication history and adaptive events. Nature Communications, (12) 3956
  • Haug B. , Messmer MM., Enjalbert J. , Goldringer I. , Forst E., Flutre T. , Mary-Huard T. , Hohmann P.. (2021) Advances in Breeding for Mixed Cropping – Incomplete Factorials and the Producer/Associate Concept. Front. Plant Sci., (11) 620400
  • Henriet C., Balliau T. , Aimé D., Le Signor C., Kreplak J., Zivy M. , Gallardo K., Vernoud V.. (2021) Proteomics of developing pea seeds reveals a complex antioxidant network underlying the response to sulfur deficiency and water stress. Journal of Experimental Botany, eraa571
  • Jabbour F., Pasquier PED., Chazalviel L., Guilloux ML., Conde E Silva N. , Deveaux Y. , Manicacci D. , Galipot P., Heiss AG., Damerval C. . (2021) Evolution of the distribution area of the Mediterranean Nigella damascena and a likely multiple molecular origin of its perianth dimorphism. Flora, (274) 151735
  • Kalendar R., Sabot F., Rodriguez F., Karlov GI., Natali L., Alix K. . (2021) Editorial: Mobile Elements and Plant Genome Evolution, Comparative Analyzes and Computational Tools. Front. Plant Sci., (12) 735134
  • Koupilová K., Koubek T., Cornille A. , Janovský Z.. (2021) Local maladaptation of the anther-smut fungus parasitizing Dianthus carthusianorum. European Journal of Plant Pathology, 2 (160) 365-374
  • Langella O. , Rusconi F. . (2021) mineXpert2: Full-Depth Visualization and Exploration of MS n Mass Spectrometry Data. J Am Soc Mass Spectrom,
  • Maroc L. , 12 février 2021, Étude sur le changement de type sexuel et les cassures chromosomiques chez Candida glabrata
  • Maroc L. , Fairhead C. . (2021) Lessons from the Nakaseomyces: mating-type switching, DSB repair and evolution of Ho. Curr Genet,
  • Mazé A., Calabuig Domenech A., Goldringer I. . (2021) Restoring cultivated agrobiodiversity: The political ecology of knowledge networks between local peasant seed groups in France. Ecological Economics, (179) 106821
  • Meguerditchian C., Ergun A., Decroocq V., Lefebvre M., Bui QT.. (2021) Pipeline to detect the relationship between transposable elements and adjacent genes in host genome. bioRxiv, 2021.02.25.432867
  • Märkle H., John S., Cornille A. , Fields PD., Tellier A.. (2021) Novel genomic approaches to study antagonistic coevolution between hosts and parasites. Molecular Ecology, (30) 3660–3676
  • Petrizzelli M., Vienne D., Nidelet T., Noûs C., Dillmann C. . (2021) Data integration uncovers the metabolic bases of phenotypic variation in yeast. bioRxiv, 2020.06.23.166405
  • Plancade S., Berland M., Blein-Nicolas M. , Langella O. , Bassignani A., Juste C.. (2021) A combined test for feature selection on sparse metaproteomics data - alternative to missing value imputation. bioRxiv, 2021.06.22.449387
  • R2D2 Consortium, Fugeray-Scarbel A., Bastien C., Dupont-Nivet M., Lemarié S.. (2021) Why and How to Switch to Genomic Selection: Lessons From Plant and Animal Breeding Experience. Front. Genet., (12) 629737
  • Recorbet G., Calabrese S., Balliau T. , Zivy M. , Wipf D., Boller T., Courty PE.. (2021) Proteome adaptations under contrasting soil phosphate regimes of Rhizophagus irregularis engaged in a common mycorrhizal network. Fungal Genetics and Biology, (147) 103517
  • Rusconi F. . (2021) Free Open Source Software for Protein and Peptide Mass Spectrometry-based Science. Curr Protein Pept Sci,
  • Sanané I., Legrand J. , Dillmann C. , Marion-Poll F.. (2021) High-Throughput Feeding Bioassay for Lepidoptera Larvae. J Chem Ecol, 7 (47) 642-652
  • Tourrette E., Falque M. , Martin OC.. (2021) Enhancing backcross programs through increased recombination. Genet Sel Evol, 1 (53) 25
  • Urrutia M., Blein-Nicolas M. , Prigent S., Bernillon S., Deborde C., Balliau T. , Maucourt M., Jacob D., Ballias P., Bénard C., Sellier H., Gibon Y., Giauffret C., Zivy M. , Moing A.. (2021) Maize metabolome and proteome responses to controlled cold stress partly mimic early-sowing effects in the field and differ from those of Arabidopsis. Plant Cell Environ,
  • İltaş Ömer., Svitok M., Cornille A. , Schmickl R., Lafon Placette C.. (2021) Early evolution of reproductive isolation: A case of weak inbreeder/strong outbreeder leads to an intraspecific hybridization barrier in Arabidopsis lyrata. Evolution, 6 (75) 1466-1476

2020

  • Allier A., 20 janvier 2020, Contributions to genetic diversity management in maize breeding programs using genomic selection
  • Allier A., Teyssèdre S., Lehermeier C., Charcosset A. , Moreau L. . (2020) Genomic prediction with a maize collaborative panel: identification of genetic resources to enrich elite breeding programs. Theor Appl Genet, 1 (133) 201-215
  • Allier A., Teyssèdre S., Lehermeier C., Moreau L. , Charcosset A. . (2020) Optimized breeding strategies to harness genetic resources with different performance levels. BMC Genomics, 1 (21) 349
  • Arca M., Gouesnard B., Mary-Huard T. , Le Paslier MC., Bauland C. , Combes V. , Madur D. , Charcosset A. , Nicolas S. . (2020) Genome-wide SNP genotyping of DNA pools identifies untapped landraces and genomic regions that could enrich the maize breeding pool. ,
  • Benoist R. , Capdevielle‐Dulac C., Chantre C., Jeannette R., Calatayud PA., Drezen JM., Dupas S., Le Rouzic A., Le Ru B., Moreau L. , Van Dijk E., Kaiser L., Mougel F.. (2020) Quantitative Trait Loci involved in the reproductive success of a parasitoid wasp. Mol Ecol, mec.15567
  • Blein-Nicolas M. , Negro SS., Balliau T. , Welcker C., Cabrera-Bosquet L., Nicolas S. , Charcosset A. , Zivy M. . (2020) A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize. Genome Res., 11 (30) 1593-1604
  • Carrillo-Perdomo E., Vidal A., Kreplak J., Duborjal H., Leveugle M., Duarte J., Desmetz C., Deulvot C., Raffiot B., Marget P., Tayeh N., Pichon JP., Falque M. , Martin OC., Burstin J., Aubert G.. (2020) Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map. Sci Rep, 1 (10) 6790
  • Carrive L., Domenech B., Sauquet H., Jabbour F., Damerval C. , Nadot S.. (2020) Insights into the ancestral flowers of Ranunculales. Botanical Journal of the Linnean Society, 1 (194) 23-46
  • Castelletti S., Coupel-Ledru A., Granato I., Palaffre C., Cabrera-Bosquet L., Tonelli C., Nicolas S. , Tardieu F., Welcker C., Conti L., de Meaux J.. (2020) Maize adaptation across temperate climates was obtained via expression of two florigen genes. PLoS Genet, 7 (16) e1008882
  • Chetouhi C., Masseret E., Satta CT., Balliau T. , Laabir M., Jean N.. (2020) Intraspecific variability in membrane proteome, cell growth, and morphometry of the invasive marine neurotoxic dinoflagellate Alexandrium pacificum grown in metal-contaminated conditions. Science of The Total Environment, (715) 136834
  • David O., van Frank G., Goldringer I. , Rivière P., Turbet Delof M. . (2020) Bayesian inference of natural selection from spatiotemporal phenotypic data. Theoretical Population Biology, (131) 00-109
  • De Oliveira Y. , Burlot L., Dawson JC., Goldringer I. , Madi D., Rivière P., Steinbach D. , van Frank G., Thomas M.. (2020) SHiNeMaS: a web tool dedicated to seed lots history, phenotyping and cultural practices. Plant Methods, 1 (16) 98
  • Denecker T., Zhou Li Y., Fairhead C. , Budin K., Camadro JM., Bolotin-Fukuhara M., Angoulvant A. , Lelandais G.. (2020) Functional networks of co-expressed genes to explore iron homeostasis processes in the pathogenic yeast Candida glabrata. NAR Genomics and Bioinformatics, 2 (2) lqaa027
  • Diouf I., Derivot L., Koussevitzky S., Carretero Y., Bitton F., Moreau L. , Causse M., Rebetzke G.. (2020) Genetic basis of phenotypic plasticity and genotype × environment interactions in a multi-parental tomato population. Journal of Experimental Botany, eraa265
  • Espinosa F., Damerval C. , Le Guilloux M. , Deroin T., Wang W., Pinedo-Castro M., Nadot S., Jabbour F.. (2020) Homeosis and delayed floral meristem termination could account for abnormal flowers in cultivars of Delphinium and Aquilegia (Ranunculaceae). Botanical Journal of the Linnean Society, boaa063
  • Falque M. , Jebreen K., Paux E., Knaak C., Mezmouk S., Martin OC.. (2020) CNVmap: A Method and Software To Detect and Map Copy Number Variants from Segregation Data. Genetics, 3 (214) 561-576
  • Goldringer I. , van Frank G., Bouvier d’Yvoire C., Forst E., Galic N. , Garnault M., Locqueville J., Pin S. , Bailly J., Baltassat R., Berthellot JF., Caizergues F., Dalmasso C., de Kochko P., Gascuel JS., Hyacinthe A., Lacanette J., Mercier F., Montaz H., Ronot B., Rivière P.. (2020) Agronomic Evaluation of Bread Wheat Varieties from Participatory Breeding: A Combination of Performance and Robustness. Sustainability, 1 (12) 128
  • Hanemian M., Vasseur F., Marchadier É. , Gilbault E., Bresson J., Gy I., Violle C., Loudet O.. (2020) Natural variation at FLM splicing has pleiotropic effects modulating ecological strategies in Arabidopsis thaliana. Nat Commun, 1 (11) 4140
  • Harlé O., Legrand J. , Tesnière C., Pradal M., Mouret JR., Nidelet T., Ohya Y.. (2020) Investigations of the mechanisms of interactions between four non-conventional species with Saccharomyces cerevisiae in oenological conditions. PLoS ONE, 5 (15) e0233285
  • Henry V., Saïs F., Inizan O., Marchadier É. , Dibie J., Goelzer A., Fromion V.. (2020) BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint. BMC Bioinformatics, 1 (21) 327
  • Jabbour F., Pasquier PED., Chazalviel L., Guilloux ML., Condee Silva N., Deveaux Y. , Manicacci D. , Galipot P., Heiss AG., Damerval C. . (2020) Evolution of the distribution area of the Mediterranean Nigella damascena and a likely multiple molecular origin of its perianth dimorphism. Flora, 151735
  • Kilani J., Davanture M. , Simon A., Zivy M. , Fillinger S.. (2020) Comparative quantitative proteomics of osmotic signal transduction mutants in Botrytis cinerea explain mutant phenotypes and highlight interaction with cAMP and Ca2+ signalling pathways. Journal of Proteomics, (212) 103580
  • Le Corre V., Siol M., Vigouroux Y., Tenaillon M. , Délye C.. (2020) Adaptive introgression from maize has facilitated the establishment of a teosinte as a noxious weed in Europe. Proc. Natl. Acad. Sci. U.S.A., 41 (117) 25618-25627
  • Lopez Arias DC., Chastellier A., Thouroude T., Bradeen J., Van Eck L., De Oliveira Y. , Paillard S., Foucher F., Hibrand-Saint Oyant L., Soufflet-Freslon V.. (2020) Characterization of black spot resistance in diploid roses with QTL detection, meta-analysis and candidate-gene identification. Theor Appl Genet,
  • Lorant A., Ross-Ibarra J., Tenaillon M. , Dutheil JY.. (2020) Genomics of Long- and Short-Term Adaptation in Maize and Teosintes. , 289-311
  • Luo J., Havé M., Clément G., Tellier F., Balliau T. , Launay-Avon A., Guérard F., Zivy M. , Masclaux-Daubresse C.. (2020) Integrating multiple omics to dissect the common and specific molecular changes occurring in Arabidopsis thaliana (L.) under nitrate and sulfate chronic limitations. Journal of Experimental Botany, eraa337
  • Maroc L. , Zhou-Li Y., Boisnard S., Fairhead C. , Heitman J.. (2020) A single Ho-induced double-strand break at the MAT locus is lethal in Candida glabrata. PLoS Genet, 10 (16) e1008627
  • Mazé A., Calabuig Domenech A., Goldringer I. . (2020) Commoning the seeds: alternative models of collective action and open innovation within French peasant seed groups for recreating local knowledge commons. Agric Hum Values,
  • Rio S., Moreau L. , Charcosset A. , Mary-Huard T. . (2020) Accounting for Group-Specific Allele Effects and Admixture in Genomic Predictions: Theory and Experimental Evaluation in Maize. Genetics, 1 (216) 27-41
  • Rio S., Mary-Huard T. , Moreau L. , Bauland C. , Palaffre C., Madur D. , Combes V. , Charcosset A. , Springer NM.. (2020) Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering. PLoS Genet, 3 (16) e1008241
  • Sanane I., 20 octobre 2020, Composantes de la dynamique de l’interaction entre le maïs et les insectes lépidoptères foreurs de tige
  • Saux M., Ponnaiah M., Langlade N., Zanchetta C., Balliau T. , El‐Maarouf‐Bouteau H., Bailly C.. (2020) A multiscale approach reveals regulatory players of water stress responses in seeds during germination. Plant Cell Environ, 5 (43) 1300-1313
  • Seye AI., Bauland C. , Charcosset A. , Moreau L. . (2020) Revisiting hybrid breeding designs using genomic predictions: simulations highlight the superiority of incomplete factorials between segregating families over topcross designs. Theor Appl Genet, 6 (133) 1995-2010
  • Tcherkez G., Carroll A., Abadie C., Mainguet S., Davanture M. , Zivy M. . (2020) Protein synthesis increases with photosynthesis via the stimulation of translation initiation. Plant Science, (291) 110352
  • Zhou Li Y., Boisnard S., Enache‐Angoulvant A., Fairhead C. . (2020) Genome editing in the yeast Nakaseomyces delphensis and description of its complete sexual cycle. Yeast, yea.3522
  • de Vienne D. , Fiévet J. . (2020) The Pitfalls of Heterosis Coefficients. Plants, 7 (9) 875
  • van Frank G., Rivière P., Pin S. , Baltassat R., Berthellot JF., Caizergues F., Dalmasso C., Gascuel JS., Hyacinthe A., Mercier F., Montaz H., Ronot B., Goldringer I. . (2020) Genetic Diversity and Stability of Performance of Wheat Population Varieties Developed by Participatory Breeding. Sustainability, 1 (12) 384

2019

  • Aguirre‐Liguori JA., Gaut BS., Jaramillo‐Correa JP., Tenaillon M. , Montes‐Hernández S., García‐Oliva F., Hearne SJ., Eguiarte LE.. (2019) Divergence with gene flow is driven by local adaptation to temperature and soil phosphorus concentration in teosinte subspecies (Zea mays parviglumis and Zea mays mexicana ). Mol Ecol, 11 (28) 2814-2830
  • Allier A., Teyssèdre S., Lehermeier C., Claustres B., Maltese S., Melkior S., Moreau L. , Charcosset A. . (2019) Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a North European grain maize program. Theor Appl Genet, 5 (132) 1321-1334
  • Allier A., Lehermeier C., Charcosset A. , Moreau L. , Teyssèdre S.. (2019) Improving Short- and Long-Term Genetic Gain by Accounting for Within-Family Variance in Optimal Cross-Selection. Front. Genet., (10) 1006
  • Allier A., Moreau L. , Charcosset A. , Teyssèdre S., Lehermeier C.. (2019) Usefulness Criterion and Post-selection Parental Contributions in Multi-parental Crosses: Application to Polygenic Trait Introgression. G3: Genes, Genomes, Genetics, 5 (9) 1469-1479
  • Bancel E., Bonnot T., Davanture M. , Alvarez D., Zivy M. , Martre P., Déjean S., Ravel C.. (2019) Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition. Front. Plant Sci., (10) 832
  • Belouah I., Nazaret C., Pétriacq P., Prigent S., Bénard C., Mengin V., Blein-Nicolas M. , Denton AK., Balliau T. , Augé S., Bouchez O., Mazat JP., Stitt M., Usadel B., Zivy M. , Beauvoit B., Gibon Y., Colombié S.. (2019) Modeling Protein Destiny in Developing Fruit. Plant Physiology, 3 (180) 1709-1724
  • Belouah I., Blein-Nicolas M. , Balliau T. , Gibon Y., Zivy M. , Colombié S.. (2019) Peptide filtering differently affects the performances of XIC-based quantification methods. J Proteomics, (193) 131-141
  • Bienvenut W. V. , 2 décembre 2019, Des débuts de la protéomique à l'acétylation N-terminale des protéines chez les plantes
  • Boussardon C., Martin-Magniette ML., Godin B., Benamar A., Vittrant B., Citerne S., Mary-Huard T. , Macherel D., Rajjou L., Budar F.. (2019) Novel Cytonuclear Combinations Modify Arabidopsis thaliana Seed Physiology and Vigor. Front Plant Sci, (10) 32
  • Carreté L., Ksiezopolska E., Gómez-Molero E., Angoulvant A. , Bader O., Fairhead C. , Gabaldón T.. (2019) Genome Comparisons of Candida glabrata Serial Clinical Isolates Reveal Patterns of Genetic Variation in Infecting Clonal Populations. Frontiers in Microbiology, (10) 112
  • Chauffour F., Bailly M., Perreau F., Cueff G., Suzuki H., Collet B., Frey A., Clément G., Soubigou-Taconnat L., Balliau T. , Krieger-Liszkay A., Rajjou L., Marion-Poll A.. (2019) Multi-omics Analysis Reveals Sequential Roles for ABA during Seed Maturation. Plant Physiol., 2 (180) 1198-1218
  • Cornille A. , Antolín F., Garcia E., Vernesi C., Fietta A., Brinkkemper O., Kirleis W., Schlumbaum A., Roldán-Ruiz I.. (2019) A Multifaceted Overview of Apple Tree Domestication. Trends in Plant Science, 8 (24) 770 - 782
  • Courret C., Gérard P. , Ogereau D., Falque M. , Moreau L. , Montchamp-Moreau C.. (2019) X-chromosome meiotic drive in Drosophila simulans: a QTL approach reveals the complex polygenic determinism of Paris drive suppression. Heredity, 6 (122) 906-915
  • Cui J., Davanture M. , Zivy M. , Lamade E., Tcherkez G.. (2019) Metabolic responses to potassium availability and waterlogging reshape respiration and carbon use efficiency in oil palm. New Phytologist, 1 (223) 310-322
  • Damerval C. , Citerne H., Conde E Silva N. , Deveaux Y. , Delannoy E., Joets J. , Simonnet F., Staedler Y., Schönenberger J., Yansouni J., Le Guilloux M. , Sauquet H., Nadot S.. (2019) Unraveling the Developmental and Genetic Mechanisms Underpinning Floral Architecture in Proteaceae. Front Plant Sci, (10) 18
  • Duruflé H., Ranocha P., Balliau T. , Dunand C., Jamet E.. (2019) Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at optimal or sub-optimal temperature. Data in Brief, (27) 104581
  • Fairhead C. , Fischer G., Liti G., Neuveglise C., Schacherer J.. (2019) Andre Goffeau's imprinting on second generation yeast "genomologists". Yeast, 4 (36) 167-175
  • Flutre T. , Diot J., David J.. (2019) PlantBreedGame: A Serious Game that Puts Students in the Breeder’s Seat. Crop Science, 0 (52) 1-2
  • Forst E., Enjalbert J. , Allard V., Ambroise C., Krissaane I., Mary-Huard T. , Robin S., Goldringer I. . (2019) A generalized statistical framework to assess mixing ability from incomplete mixing designs using binary or higher order variety mixtures and application to wheat. Field Crops Research, (242) 107571
  • Fustier MA., Martínez-Ainsworth NE., Aguirre-Liguori JA., Venon A. , Corti H., Rousselet A. , Dumas F. , Dittberner H., Camarena MG., Grimanelli D., Ovaskainen O., Falque M. , Moreau L. , Meaux J., Montes-Hernández S., Eguiarte LE., Vigouroux Y., Manicacci D. , Tenaillon M. . (2019) Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude. PLOS Genetics, 12 (15) e1008512
  • Gabaldón T., Fairhead C. . (2019) Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal. Curr. Genet., 1 (65) 93-98
  • Hartmann FE., Rodríguez de la Vega RC., Carpentier F., Gladieux P., Cornille A. , Hood ME., Giraud T.. (2019) Understanding Adaptation, Coevolution, Host Specialization, and Mating System in Castrating Anther-Smut Fungi by Combining Population and Comparative Genomics. Annu. Rev. Phytopathol., 1 (57) annurev-phyto-082718-095947
  • Havé M., Luo J., Tellier F., Balliau T. , Cueff G., Chardon F., Zivy M. , Rajjou L., Cacas JL., Masclaux‐Daubresse C.. (2019) Proteomic and lipidomic analyses of the Arabidopsis atg5 autophagy mutant reveal major changes in ER and peroxisome metabolisms and in lipid composition. New Phytol, 3 (223) 1461-1477
  • Henry C., Haller L., Blein-Nicolas M. , Zivy M. , Canette A., Verbrugghe M., Mézange C., Boulay M., Gardan R., Samson S., Martin V., André-Leroux G., Monnet V.. (2019) Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome. Front. Microbiol., (10) 1329
  • Jebreen K., Petrizzelli M., Martin OC.. (2019) Probabilities of Multilocus Genotypes in SIB Recombinant Inbred Lines. Front. Genet., (10) 833
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  • Liu S., Cornille A. , Decroocq S., Tricon D., Chague A., Eyquard JP., Liu WS., Giraud T., Decroocq V.. (2019) The complex evolutionary history of apricots: species divergence, gene flow and multiple domestication events. Mol Ecol, mec.15296
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  • Martinez N., 25/10/2019, Characterizing the genomic determinants and phenotypic responses to altitudinal adaptation in teosintes (Zea mays ssp. parviglumis and ssp. mexicana)
  • Martinez Palacios P., Jacquemot MP., Tapie M., Rousselet A. , Diop M., Remoué C. , Falque M. , Lloyd A., Jenczewski E., Lassalle G., Chévre AM., Lelandais C., Crespi M., Brabant P., Joets J. , Alix K. . (2019) Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus Allotetraploids. Mol Biol Evol, 4 (36) 709-726
  • Millet EJ., Kruijer W., Coupel-Ledru A., Prado SA., Cabrera-Bosquet L., Lacube S., Charcosset A. , Welcker C., Eeuwijk F., Tardieu F.. (2019) Genomic prediction of maize yield across European environmental conditions. Nat Genet, 6 (51) 952-956
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  • Peace CP., Bianco L., Troggio M., van de Weg E., Howard NP., Cornille A. , Durel CE., Myles S., Migicovsky Z., Schaffer RJ., Costes E., Fazio G., Yamane H., van Nocker S., Gottschalk C., Costa F., Chagné D., Zhang X., Patocchi A., Gardiner SE., Hardner C., Kumar S., Laurens F., Bucher E., Main D., Jung S., Vanderzande S.. (2019) Apple whole genome sequences: recent advances and new prospects. Hortic Res, 1 (6) 59
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  • Petrizzelli M., 8 juillet 2019, Mathematical modelling and integration of complex biological data: analysis of the heterosis phenomenon in yeas
  • Rio S., 2019-04-26 26/04/19, Contributions to genomic selection and association mapping in structured and admixed populations : application to maize
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  • Ruhsam M., Jessop W., Cornille A. , Renny J., Worrell R.. (2019) Crop-to-wild introgression in the European wild apple Malus sylvestris in Northern Britain. Forestry (Lond), 1 (92) 85-96
  • Rusconi F. . (2019) mineXpert: Biological Mass Spectrometry Data Visualization and Mining with Full JavaScript Ability. J. Proteome Res., 5 (18) 2254-2259
  • Scarcelli N., Cubry P., Akakpo R., Thuillet AC., Obidiegwu J., Baco MN., Otoo E., Sonké B., Dansi A., Djedatin G., Mariac C., Couderc M., Causse S., Alix K. , Chaïr H., François O., Vigouroux Y.. (2019) Yam genomics supports West Africa as a major cradle of crop domestication. Sci. Adv., 5 (5) eaaw1947
  • Seye A., 2019-03-21 21/03/19, Prédiction assistée par marqueurs de la performance hybride dans un schéma de sélection réciproque : simulations et évaluation expérimentale pour le maïs ensilage
  • Seye AI., Bauland C. , Giraud H., Mechin V., Reymond M., Charcosset A. , Moreau L. . (2019) Quantitative trait loci mapping in hybrids between Dent and Flint maize multiparental populations reveals group-specific QTL for silage quality traits with variable pleiotropic effects on yield. Theor Appl Genet, 5 (132) 1523-1542
  • Srisuwan S., Sihachakr D., Martin J., Valles J., Ressayre A. , Brown SC., Siljak-Yakovlev S.. (2019) Change in nuclear DNA content and pollen size with polyploidisation in the sweet potato (Ipomoea batatas, Convolvulaceae) complex. Plant Biol (Stuttg), 2 (21) 237-247
  • Termolino P., Falque M. , Aiese Cigliano R., Cremona G., Paparo R., Ederveen A., Martin OC., Consiglio FM., Conicella C.. (2019) Recombination suppression in heterozygotes for a pericentric inversion induces the interchromosomal effect on crossovers in Arabidopsis. Plant J, 6 (100) 1163-1175
  • Tourrette E., Bernardo R., Falque M. , Martin OC.. (2019) Assessing by Modeling the Consequences of Increased Recombination in Recurrent Selection of Oryza sativa and Brassica rapa. G3, 12 (9) 4169-4181
  • Tourrette E., 25 novembre 2019, Unleashing genetic diversity in breeding by increasing recombination: an in silico study
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2018

  • Achour Z., 2018-05-15 15/05/18, Réponse du méthylome suite à l’exposition au froid chez une espèce à génome complexe : le maïs (Zea mays ssp. mays)
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  • Akakpo R., 2018-05-16 16/05/18, Étude de la domestication et de l’adaptation de l’igname (Dioscorea spp) en Afrique par des approches génomiques
  • Alaux M., Rogers J., Letellier T., Flores R., Alfama F., Pommier C., Mohellibi N., Durand S., Kimmel E., Michotey C., Guerche C., Loaec M., Lainé M., Steinbach D. , Choulet F., Rimbert H., Leroy P., Guilhot N., Salse J., Feuillet C., Paux E., Eversole K., Adam-Blondon AF., Quesneville H., International Wheat Genome Sequencing Consortium. (2018) Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. Genome Biol, 1 (19) 111
  • Albert B., Ressayre A. , Dillmann C. , Carlson AL., Swanson RJ., Gouyon PH., Dobritsa AA.. (2018) Effect of aperture number on pollen germination, survival and reproductive success in Arabidopsis thaliana. Ann. Bot., 4 (121) 733-740
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  • Aloui A., Recorbet G., Lemaître-Guillier C., Mounier A., Balliau T. , Zivy M. , Wipf D., Dumas-Gaudot E.. (2018) The plasma membrane proteome of Medicago truncatula roots as modified by arbuscular mycorrhizal symbiosis. Mycorrhiza, 1 (28) 1-16
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  • Berrabah F., Balliau T. , Ait-Salem EH., George J., Zivy M. , Ratet P., Gourion B.. (2018) Control of the ethylene signaling pathway prevents plant defenses during intracellular accommodation of the rhizobia. The New phytologist, 1 (219) 310-323
  • Bichang'a G., Da Lage JL., Capdevielle-Dulac C., Zivy M. , Balliau T. , Sambai K., Le Ru B., Kaiser L., Juma G., Maina ENM., Calatayud PA.. (2018) alpha-Amylase Mediates Host Acceptance in the Braconid Parasitoid Cotesia flavipes. J Chem Ecol, 11 (44) 1030-1039
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  • Carbonetto B., Ramsayer J., Nidelet T., Legrand J. , Sicard D.. (2018) Bakery yeasts, a new model for studies in ecology and evolution. Yeast, 11 (35) 591-603
  • Carrete L., Ksiezopolska E., Pegueroles C., Gomez-Molero E., Saus E., Iraola-Guzman S., Loska D., Bader O., Fairhead C. , Gabaldon T.. (2018) Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans. Current biology : CB, 1 (28) 15-27 e7
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  • Collot D., 2018-06-19 19/06/18, Modélisation des dynamiques adaptatives de la levure de boulanger S. cerevisae dans un environnement saisonnier
  • Damerval C. , Othman WB., Manicacci D. , Jabbour F.. (2018) Distribution area of the two floral morphs of Nigella damascena L. (Ranunculaceae): A diachronic study using herbarium specimens collected in France. Botany Letters, 3-4 (165) 396-403
  • Dard-Dascot C., Naquin D., d'Aubenton-Carafa Y., Alix K. , Thermes C., van Dijk E.. (2018) Systematic comparison of small RNA library preparation protocols for next-generation sequencing. BMC genomics, 1 (19) 118
  • Darracq A., Vitte C. , Nicolas S. , Duarte J., Pichon JP., Mary-Huard T. , Chevalier C., Bérard A., Le Paslier MC., Rogowsky P., Charcosset A. , Joets J. . (2018) Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants. BMC Genomics, 1 (19) 119
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  • Forst E., 2018-03-29 29/03/18, Développement de méthodes d'estimation de l'aptitude au mélange pour la prédiction des performances et la sélection de mélanges variétaux chez le blé tendre, et co-conception d'idéotypes de mélanges adaptés à l'agriculture biologique
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  • Havé M., Balliau T. , Cottyn-Boitte B., Dérond E., Cueff G., Soulay F., Lornac A., Reichman P., Dissmeyer N., Avice JC., Gallois P., Rajjou L., Zivy M. , Masclaux-Daubresse C.. (2018) Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?. J Exp Bot, 6 (69) 1369-1385
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  • Oury FX., Heumez E., Rolland B., Auzanneau J., Bérard P., Brancourt-Hulmel M., Charrier X., Chiron H., Depatureaux C., Falchetto L., Gardet O., Gilles S., Giraud A., Lecomte C., Jean-Yves Morlais ., Pluchard P., Tropée D. , Trottet M., Walczak P., Doussinault G., Rousset M., Charmet G., Oury FX., Charmet G., Pommier C.. (2018) Winter wheat (Triticum aestivum L) phenotypic data from the multiannual, multilocal field trials of the INRA Small Grain Cereals Network. ,
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2017

  • Adam-Blondon AF., Alaux M., Durand S., Letellier T., Merceron G., Mohellibi N., Pommier C., Steinbach D. , Alfama F., Amselem J., Charruaud D., Choisne N., Flores R., Guerche C., Jamilloux V., Kimmel E., Lapalu N., Loaec M., Michotey C., Quesneville H., van Dijk ADJ.. (2017) Mining Plant Genomic and Genetic Data Using the GnpIS Information System. , (1533) 103-117
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  • Akakpo R., Scarcelli N., Chaïr H., Dansi A., Djedatin G., Thuillet AC., Rhoné B., François O., Alix K. , Vigouroux Y.. (2017) Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes. BMC Genomics, 1 (18) 782
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  • Baldy A., Jacquemot MP., Griveau Y., Bauland C. , Reymond M., Mechin V.. (2017) Energy Values of Registered Corn Forage Hybrids in France over the Last 20 Years Rose in a Context of Maintained Yield Increase. American Journal of Plant Sciences, (08) 1449
  • Barot S., Allard V., Cantarel A., Enjalbert J. , Gauffreteau A., Goldringer I. , Lata JC., Le Roux X., Niboyet A., Porcher E.. (2017) Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agron. Sustain. Dev., 2 (37) 13
  • Bedoya CA., Dreisigacker S., Hearne S., Franco J., Mir C., Prasanna BM., Taba S., Charcosset A. , Warburton ML.. (2017) Genetic diversity and population structure of native maize populations in Latin America and the Caribbean. PLoS One, 4 (12)
  • Bolotin-Fukuhara M.. (2017) Thirty years of the HAP2/3/4/5 complex. Biochim Biophys Acta Gene Regul Mech, 5 (1860) 543-559
  • Bonnot T., Bancel E., Alvarez D., Davanture M. , Boudet J., Pailloux M., Zivy M. , Ravel C., Martre P.. (2017) Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum. The Plant Journal, 5 (91) 894-910
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  • Bukreyeva I., Angoulvant A. , Bendib I., Gagnard JC., Bourhis JH., Dargère S., Bonhomme J., Thellier M., Gachot B., Wyplosz B.. (2017) Enterocytozoon bieneusi Microsporidiosis in Stem Cell Transplant Recipients Treated with Fumagillin1. Emerg Infect Dis, 6 (23) 1039-1041
  • Cañas RA., Yesbergenova-Cuny Z., Simons M., Chardon F., Armengaud P., Quilleré I., Cukier C., Gibon Y., Limami AM., Nicolas S. , Brulé L., Lea PJ., Maranas CD., Hirel B.. (2017) Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield. The Plant Cell, 5 (29) 919-943
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  • Damerval C. , Jabbour F., Nadot S., Citerne HL., Nuno de la Rosa L., Müller G.. (2017) Evolution of symmetry in plants. , 1-18
  • Damerval C. , Becker A.. (2017) Genetics of flower development in Ranunculales – a new, basal eudicot model order for studying flower evolution. New Phytologist, 2 (216) 361-366
  • Damerval C. , Nadot S.. (2017) Letter to the 21st century botanist: “What is a flower?” 6. The evo-devo of floral symmetry. Botany Letters, 3 (164) 193-196
  • Delatola EI., Lebarbier E., Mary-Huard T. , Radvanyi F., Robin S., Wong J.. (2017) SegCorr a statistical procedure for the detection of genomic regions of correlated expression. BMC Bioinformatics, 1 (18) 333
  • Demeulenaere Élise., Rivière P., Hyacinthe A., Baltassat R., Baltazar S., Gascuel JS., Lacanette J., Montaz H., Pin S. , Ranke O., Serpolay-Besson E., Thomas M., Frank GV., Vanoverschelde M., Vindras-Fouillet C., Goldringer I. . (2017) La sélection participative à l’épreuve du changement d’échelle. À propos d’une collaboration entre paysans sélectionneurs et généticiens de terrain. Nat. Sci. Soc., 4 (25) 336-346
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  • Duruflé H., Hervé V., Ranocha P., Balliau T. , Zivy M. , Chourré J., San Clemente H., Burlat V., Albenne C., Déjean S., Jamet E., Dunand C.. (2017) Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study. Plant Science, (263) 183-193
  • Duruflé H., Clemente HS., Balliau T. , Zivy M. , Dunand C., Jamet E.. (2017) Cell wall proteome analysis of Arabidopsis thaliana mature stems. PROTEOMICS, 8 (17) 1600449
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  • Giraud H., Bauland C. , Falque M. , Madur D. , Combes V. , Jamin P., Monteil C., Laborde J., Palaffre C., Gaillard A., Blanchard P., Charcosset A. , Moreau L. . (2017) Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.). G3: Genes, Genomes, Genetics, g3.300121.2017
  • Giraud H., Bauland C. , Falque M. , Madur D. , Combes V. , Jamin P., Monteil C., Laborde J., Palaffre C., Gaillard A., Blanchard P., Charcosset A. , Moreau L. . (2017) Reciprocal Genetics: Identifying QTL for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups. Genetics, 3 (207) 1167-1180
  • Gouesnard B., Negro S., Laffray A., Glaubitz J., Melchinger A., Revilla P., Moreno-Gonzalez J., Madur D. , Combes V. , Tollon-Cordet C., Laborde J., Kermarrec D., Bauland C. , Moreau L. , Charcosset A. , Nicolas S. . (2017) Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank. Theor Appl Genet, 10 (130) 2165-2189
  • Henry VJ., Saïs F., Marchadier É. , Dibie J., Goelzer A., Fromion V.. (2017) BiPOm: Biological interlocked Process Ontology for metabolism. How to infer molecule knowledge from biological process?. , np
  • Jean N., Dumont E., Herzi F., Balliau T. , Laabir M., Masseret E., Mounier S.. (2017) Modifications of the soluble proteome of a mediterranean strain of the invasive neurotoxic dinoflagellate Alexandrium catenella under metal stress conditions. Aquatic Toxicology, (188) 80-91
  • Langella O. , Valot B., Balliau T. , Blein-Nicolas M. , Bonhomme L., Zivy M. . (2017) X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification. J. Proteome Res., 2 (16) 494-503
  • Laporte F., Charcosset A. , Mary‐Huard T.. (2017) Estimation of the relatedness coefficients from biallelic markers, application in plant mating designs. Biometrics, 3 (73) 885-894
  • Larièpe A., Moreau L. , Laborde J., Bauland C. , Mezmouk S., Décousset L., Mary-Huard T. , Fiévet J. , Gallais A., Dubreuil P., Charcosset A. . (2017) General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents. Theor. Appl. Genet., 2 (130) 403-417
  • Lecarpentier C., 2017-01-25 25/01/17, Valorisation de la diversité intra-parcelle dans un contexte de changement climatique. Développement d'un modèle couplant écophysiologie 3D et génétique évolutive.
  • Mary-Huard T. , 2017-06-12 06/12/17, Some contributions to statistical modeling and model selection with applications to genomics and quantitative genetics
  • Millan-Oropeza A., Henry C., Blein-Nicolas M. , Aubert-Frambourg A., Moussa F., Bleton J., Virolle MJ.. (2017) Quantitative Proteomics Analysis Confirmed Oxidative Metabolism Predominates in Streptomyces coelicolor versus Glycolytic Metabolism in Streptomyces lividans. J. Proteome Res., 7 (16) 2597-2613
  • Moreau L. , 2017-06-13 13/06/17, Utilisation des marqueurs en sélection : des QTL à la Sélection Génomique
  • Negroni L., Zivy M. , Lemaire C., Lacapere JJ.. (2017) Mass Spectrometry of Mitochondrial Membrane Protein Complexes. , 233-246
  • Ousseini IS., Bakasso Y., Kane NA., Couderc M., Zekraoui L., Mariac C., Manicacci D. , Rhoné B., Barnaud A., Berthouly-Salazar C., Assoumane A., Moussa D., Moussa T., Vigouroux Y.. (2017) Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet. Heredity, 2 (119) 88-94
  • Pelé A., Falque M. , Trotoux G., Eber F., Nègre S., Gilet M., Huteau V., Lodé M., Jousseaume T., Dechaumet S., Morice J., Poncet C., Coriton O., Martin OC., Rousseau-Gueutin M., Chèvre AM.. (2017) Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas. PLoS Genet, 5 (13)
  • Perronne R., Diguet S., Vallavieille-Pope C., Leconte M., Enjalbert J. . (2017) A framework to characterize the commercial life cycle of crop varieties: Application to the case study of the influence of yellow rust epidemics on French bread wheat varieties. Field Crops Research, (209) 159-167
  • Perronne R., Makowski D., Goffaux R., Montalent P. , Goldringer I. . (2017) Temporal evolution of varietal, spatial and genetic diversity of bread wheat between 1980 and 2006 strongly depends upon agricultural regions in France. Agriculture, Ecosystems & Environment, (236) 12-20
  • Regente M., Pinedo M., San Clemente H., Balliau T. , Jamet E., de la Canal L.. (2017) Plant extracellular vesicles are incorporated by a fungal pathogen and inhibit its growth. J Exp Bot, 20 (68) 5485-5495
  • Renvoisé M., Bonhomme L., Davanture M. , Zivy M. , Lemaire C., Tan AC., Huang PH.. (2017) Phosphoproteomic Analysis of Isolated Mitochondria in Yeast. , 283-299
  • Rincent R. , Charcosset A. , Moreau L. . (2017) Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations. Theor Appl Genet, 11 (130) 2231-2247
  • Rouzet A., Reboux G., Dalphin JC., Gondouin A., De Vuyst P., Balliau T. , Millon L., Valot B., Roussel S.. (2017) An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung. Journal of Immunological Methods, (450) 58-65
  • Samal A., Martin OC.. (2017) Haldane, Waddington and recombinant inbred lines: extension of their work to any number of genes. J. Genet., 5 (96) 795-800
  • Villegente M., Marmey P., Job C., Galland M., Cueff G., Godin B., Rajjou L., Balliau T. , Zivy M. , Fogliani B., Sarramegna-Burtet V., Job D.. (2017) A Combination of Histological, Physiological, and Proteomic Approaches Shed Light on Seed Desiccation Tolerance of the Basal Angiosperm Amborella trichopoda. Proteomes, 3 (5)

2016

  • Ali S., Soubeyrand S., Gladieux P., Giraud T., Leconte M., Gautier A., Mboup M., Chen X. , Vallavieille‐Pope C., Enjalbert J. . (2016) cloncase: Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms. Molecular Ecology Resources, 4 (16) 845-861
  • Angoulvant A. , Guitard J., Hennequin C.. (2016) Old and new pathogenic Nakaseomyces species: epidemiology, biology, identification, pathogenicity and antifungal resistance. FEMS Yeast Res, 2 (16)
  • Berthouly‐Salazar C., Thuillet AC., Rhoné B., Mariac C., Ousseini IS., Couderc M., Tenaillon M. , Vigouroux Y.. (2016) Genome scan reveals selection acting on genes linked to stress response in wild pearl millet. Molecular Ecology, 21 (25) 5500-5512
  • Blein-Nicolas M. , Zivy M. . (2016) Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 8 (1864) 883-895
  • Bolotin-Fukuhara M., Fairhead C. . (2016) Editorial: Candida glabrata, the other yeast pathogen. FEMS Yeast Res, 2 (16)
  • Bougnoux ME., Dannaoui E., Accoceberry I., Angoulvant A. , Bailly E., Botterel F., Chevrier S., Chouaki T., Cornet M., Dalle F., Datry A., Dupuis A., Fekkar A., Gangneux JP., Guitard J., Hennequin C., Le Govic Y., Le Pape P., Maubon D., Ranque S., Sautour M., Sendid B., Chandenier J.. (2016) Multicenter Comparison of the Etest and EUCAST Methods for Antifungal Susceptibility Testing of Candida Isolates to Micafungin. Antimicrob Agents Chemother, 8 (60) 5088-5091
  • Boutet G., Alves Carvalho S., Falque M. , Peterlongo P., Lhuillier E., Bouchez O., Lavaud C., Pilet-Nayel ML., Rivière N., Baranger A.. (2016) SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population. BMC Genomics, (17)
  • Cossard G., Sannier J., Sauquet H., Damerval C. , de Craene LR., Jabbour F., Nadot S.. (2016) Subfamilial and tribal relationships of Ranunculaceae: evidence from eight molecular markers. Plant Syst Evol, 4 (302) 419-431
  • Desclée de Maredsous C., Oozeer R., Barbillon P., Mary-Huard T. , Delteil C., Blachier F., Tomé D., van der Beek EM., Davila AM.. (2016) High-Protein Exposure during Gestation or Lactation or after Weaning Has a Period-Specific Signature on Rat Pup Weight, Adiposity, Food Intake, and Glucose Homeostasis up to 6 Weeks of Age. J. Nutr., 1 (146) 21-29
  • Dobrenel T., Mancera-Martínez E., Forzani C., Azzopardi M., Davanture M. , Moreau L. , Schepetilnikov M., Chicher J., Langella O. , Zivy M. , Robaglia C., Ryabova LA., Hanson J., Meyer C.. (2016) The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6. Front Plant Sci, (7)
  • Durand JL., Andrieu B., Barillot R., Barre P., Combes V. , Enjalbert J. , Escobar-Gutierrez A., Faverjon L., Lecarpentier C., Litrico I., Louarn G., Migault V., Sanchez D. . (2016) Designing and improving mixed grasslands: advances made in modelling forage variety performance. Fourrages, 225 21-28
  • Enjalbert J. , 2016-01-13 13/01/16, De la génétique des clones à l'agroécologie
  • Enjalbert J. , Allard V., Andrieu B., Barot S., Borg J., Cantarel A., Feret M., Cervek C., Coleno FC., Pope De Vallavieille C., Descoureaux D., Dubs F., Galic N. , Gauffreteau A., Gilet JD., Goldringer I. , Hannachi M., Houivet G., Pin S. , Jeuffroy MH., Kerbiriou C., Labarthe P., LATA JC., LeCarpentier C., Lejars L., Lemain B., Lemarié S., Leny F., Le Roux X., Le Viol I., Montagnier C., NIBOYET A., Omon B., Piaud S., Poly F., Pommier T., Porcher E., Saint-Jean S., Salmon S., Tropée D. , Vidal T.. (2016) Increasing species richness and genetic diversity in agriculture: results of the Wheatamix project. , 40 p.
  • Fernandez O., Urrutia M., Bernillon S., Giauffret C., Tardieu F., Le Gouis J., Langlade N., Charcosset A. , Moing A., Gibon Y.. (2016) Fortune telling: metabolic markers of plant performance. Metabolomics, 10 (12) 158
  • Fiume E., Guyon V., Remoué C. , Magnani E., Miquel M., Grain D., Lepiniec L.. (2016) TWS1, a Novel Small Protein, Regulates Various Aspects of Seed and Plant Development1[OPEN]. Plant Physiol, 3 (172) 1732-1745
  • Friggens NC., Duvaux-Ponter C., Etienne MP., Mary-Huard T. , Schmidely P.. (2016) Characterizing individual differences in animal responses to a nutritional challenge: Toward improved robustness measures. Journal of Dairy Science, 4 (99) 2704-2718
  • Fustier MA., 2016-06-16 16/06/16, Adaptation locale des téosintes Zea mays ssp. parviglumis et Zea mays ssp. mexicana le long de gradients altitudinaux
  • Giraud H., 2016-01-22 22/01/16, Genetic analysis of hybrid value for silage maize in multiparental designs : QTL detection and genomic selection
  • Hazard L., Gauffreteau A., Borg J., Charron MH., Deo M., Enjalbert J. , Goutiers V., Gressier E.. (2016) Using innovative approaches to meet the challenges of a rapidly changing climate and world: the utility of co-design in plant breeding programmes. Fourrages, 225 39-47
  • Henry A., Martin OC.. (2016) Short relaxation times but long transient times in both simple and complex reaction networks. Journal of the Royal Society, Interface / the Royal Society, 120 (13)
  • Herve V., Durufle H., San Clemente H., Albenne C., Balliau T. , Zivy M. , Dunand C., Jamet E.. (2016) An enlarged cell wall proteome of Arabidopsis thaliana rosettes. Proteomics, 24 (16) 3183-3187
  • Hosseini SR., Martin OC., Wagner A.. (2016) Phenotypic innovation through recombination in genome-scale metabolic networks. Proceedings. Biological sciences, 1839 (283)
  • Jacques N., Sarilar V., Urien C., Lopes MR., Morais CG., Uetanabaro AP., Tinsley CR., Rosa CA., Sicard D., Casaregola S.. (2016) Three novel ascomycetous yeast species of the Kazachstania clade, Kazachstania saulgeensis sp. nov., Kazachstania serrabonitensis sp. nov. and Kazachstania australis sp. nov. Reassignment of Candida humilis to Kazachstania humilis f.a. comb. nov. and Candida pseudohumilis to Kazachstania pseudohumilis f.a. comb. nov. International journal of systematic and evolutionary microbiology, 12 (66) 5192-5200
  • Labeyrie V., Thomas M., Muthamia ZK., Leclerc C.. (2016) Seed exchange networks, ethnicity, and sorghum diversity. Proceedings of the National Academy of Sciences of the United States of America, 1 (113) 98-103
  • Legrand J. , Bolotin-Fukuhara M., Bourgais A., Fairhead C. , Sicard D.. (2016) Life-history strategies and carbon metabolism gene dosage in the Nakaseomyces yeasts. FEMS yeast research, 2 (16) fov112
  • Levy M., Pham LL., Faye A., de Suremain N., Rambaud J., Angoulvant A. , Miatello J., Dauger S., Naudin J.. (2016) Parenteral Artesunate for Severe Imported Plasmodium falciparum Malaria in Children. The Pediatric infectious disease journal, 9 (35) 1053-4
  • Lhomme E., Urien C., Legrand J. , Dousset X., Onno B., Sicard D.. (2016) Sourdough microbial community dynamics: An analysis during French organic bread-making processes. Food Microbiology, Pt A (53) 41-50
  • Martin OC., Krzywicki A., Zagorski M.. (2016) Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function. Physics of life reviews, (17) 124-58
  • Martinez-Ainsworth NE., Tenaillon M. . (2016) Superheroes and masterminds of plant domestication. Comptes rendus biologies, 7-8 (339) 268-73
  • Millet E., Welcker C., Kruijer W., Negro S., Nicolas S. , Coupel-Ledru A., Bauland C. , Praud S., Ranc N., Presterl T., Tuberosa R., Bedo Z., Draye X., Usadel B., Charcosset A. , van Eeuwijk F., Tardieu F.. (2016) Genome-wide analysis of yield in Europe: allelic effects as functions of drought and heat scenarios. Plant physiology, 2 (172) 749-764
  • Moreau L. , Charmet G., Charcosset A. , Le Gouis J., Deretz S.. (2016) Quelle place pour la selection génomique chez les espèces de grande culture ?. ,
  • Mori M., Hwa T., Martin OC., De Martino A., Marinari E.. (2016) Constrained Allocation Flux Balance Analysis. PLoS computational biology, 6 (12) e1004913
  • Nguyen-Kim H., San Clemente H., Balliau T. , Zivy M. , Dunand C., Albenne C., Jamet E.. (2016) Arabidopsis thaliana root cell wall proteomics: Increasing the proteome coverage using a combinatorial peptide ligand library and description of unexpected Hyp in peroxidase amino acid sequences. Proteomics, 3 (16) 491-503
  • Nicolas S. , Peros JP., Lacombe T., Launay A., Le Paslier MC., Berard A., Mangin B., Valiere S., Martins F., Le Cunff L., Laucou V., Bacilieri R., Dereeper A., Chatelet P., This P., Doligez A.. (2016) Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC plant biology, 1 (16) 74
  • Perronne R., Hannachi M., Lemarié S., Fugeray-Scarbel A., Goldringer I. . (2016) L’évolution de la filière blé tendre en France entre 1980 et 2006: quelle influence sur la diversité cultivée ?. Notes et Etudes Socio-Economiques (NESE), (41) 83-113
  • Reboud X., Sicard D., Bataillon T., Bedhomme S., Dillmann C. , Gaba S., Gallet R., Guidot A., Goldringer I. , Jasmin JN., Kaltz O., Méry F., Nidelet T., Schneider D., Spor A., Thomas F., Raymond M., Lefevre T.. (2016) Évolution expérimentale. , 755-790
  • Revilla P., Rodriguez VM., Ordas A., Rincent R. , Charcosset A. , Giauffret C., Melchinger AE., Schon CC., Bauer E., Altmann T., Brunel D., Moreno-Gonzalez J., Campo L., Ouzunova M., Alvarez A., Ruiz de Galarreta JI., Laborde J., Malvar RA.. (2016) Association mapping for cold tolerance in two large maize inbred panels. BMC plant biology, 1 (16) 127
  • Roux F., Mary-Huard T. , Barillot E., Wenes E., Botran L., Durand S., Villoutreix R., Martin-Magniette ML., Camilleri C., Budar F.. (2016) Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field. Proceedings of the National Academy of Sciences of the United States of America, 13 (113) 3687-92
  • Sabarly V., Aubron C., Glodt J., Balliau T. , Langella O. , Chevret D., Rigal O., Bourgais A., Picard B., de Vienne D. , Denamur E., Bouvet O., Dillmann C. . (2016) Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates. Environmental microbiology, 1 (18) 100-17
  • Solano J., Acuña I., Chauvin JE., Brabant P.. (2016) In-Vitro Evaluation of Resistance to Late Blight (Phytophthora infestans Mont. De Bary.) in Solanum Accessions Native to Chile, by Inoculation of Detached Leaflets. Am J Pl Sci, 3 (7) 581-589
  • Tenaillon M. , Manicacci D. , Nicolas S. , Tardieu F., Welcker C.. (2016) Testing the link between genome size and growth rate in maize. PeerJ, (4) e2408
  • Thomas M., Caillon S.. (2016) Effects of farmer social status and plant biocultural value on seed circulation networks in Vanuatu. Ecol Soc, 2 (21) 13
  • Violon C., Thomas M., Garine E.. (2016) Good year, bad year: changing strategies, changing networks? A two-year study on seed acquisition in northern Cameroon. Ecol Soc, 2 (21) 34
  • Walter S., Ali S., Kemen E., Nazari K., Bahri BA., Enjalbert J. , Hansen JG., Brown JK., Sicheritz-Ponten T., Jones J., de Vallavieille-Pope C., Hovmoller MS., Justesen AF.. (2016) Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis. Ecology and evolution, 9 (6) 2790-804
  • Wencélius J., Thomas M., Barbillon P., Garine E.. (2016) Interhousehold variability and its effects on seed circulation networks: a case study from northern Cameroon. Ecol Soc, 1 (21) 44

2015

  • Angoulvant A. , Stern JB., Wittnebel S., Bourhis JH., Gachot B., Vittecoq D., Wyplosz B.. (2015) Photo quiz. Dyspnea and fever in an allogeneic stem cell recipient. Clin. Infect. Dis., 1 (60) 100, 157-158
  • Badouin H., Hood ME., Gouzy J., Aguileta G., Siguenza S., Perlin MH., Cuomo CA., Fairhead C. , Branca A., Giraud T.. (2015) Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae. Genetics, 4 (200) 1275-1284
  • Bancel E., Bonnot T., Davanture M. , Branlard G., Zivy M. , Martre P.. (2015) Proteomic Approach to Identify Nuclear Proteins in Wheat Grain. J. Proteome Res., 10 (14) 4432-4439
  • Barbillon P., Thomas M., Goldringer I. , Hospital F., Robin S.. (2015) Network impact on persistence in a finite population dynamic diffusion model: application to an emergent seed exchange network. J. Theor. Biol., (365) 365-376
  • Bel L., Daudin JJ., Etienne M., Lebarbier E., Mary-Huard T. , Robin S., Vuillet C., Daudin JJ.. (2015) Modèle mixte, modélisation de la variance. , 162-189
  • Bel L., Daudin JJ., Etienne M., Lebarbier E., Mary-Huard T. , Robin S., Vuillet C., Daudin JJ.. (2015) Plans d’expérience. , 218-246
  • Blein-Nicolas M. , Albertin W., da Silva T., Valot B., Balliau T. , Masneuf-Pomarède I., Bely M., Marullo P., Sicard D., Dillmann C. , de Vienne D. , Zivy M. . (2015) A Systems Approach to Elucidate Heterosis of Protein Abundances in Yeast. Mol. Cell Proteomics, 8 (14) 2056-2071
  • Boisnard S., Zhou Li Y., Arnaise S., Sequeira G., Raffoux X. , Enache-Angoulvant A., Bolotin-Fukuhara M., Fairhead C. . (2015) Efficient Mating-Type Switching in Candida glabrata Induces Cell Death. PLoS ONE, 10 (10) e0140990
  • Chapeland-Leclerc F., Dilmaghani A., Ez-Zaki L., Boisnard S., Da Silva B., Gaslonde T., Poree FH., Ruprich-Robert G.. (2015) Systematic gene deletion and functional characterization of histidine kinase phosphorelay receptors (HKRs) in the human pathogenic fungus Aspergillus fumigatus. Fungal Genet. Biol., (84) 1-11
  • Deroin T., Damerval C. , Le Guilloux M. , Jabbour F.. (2015) Floral vascular patterns of the double-flowered and wild-type morphs of Nigella damascena L. (Ranunculaceae). Modern Phytomorphology, (7) 13-20
  • Desclée de Maredsous C., Oosting A., Delteil C., Blachier F., Barbillon P., Mary-Huard T. , Tome D., Oozeer R., Davila AM.. (2015) High-Protein Diet during Gestation Promotes Adiposity and Food Intake in Female Rat Pups in the Longer Term. Faseb J., 1 (29)
  • Durand E., Tenaillon M. , Raffoux X. , Thépot S., Falque M. , Jamin P., Bourgais A., Ressayre A. , Dillmann C. . (2015) Dearth of polymorphism associated with a sustained response to selection for flowering time in maize. BMC Evol Biol, 1 (15) 103
  • Falque M. , 2015-10-15 15/10/15, Sur les traces de la recombinaison méiotique, source de biodiversité et outil génétique
  • Gaba S., Lescourret F., Boudsocq S., Enjalbert J. , Hinsinger P., Journet EP., Navas ML., Wery J., Louarn G., Malezieux E., Pelzer E., Prudent M., Ozier-Lafontaine H.. (2015) Multiple cropping systems as drivers for providing multiple ecosystem services: from concepts to design. Agron Sustain Dev, 2 (35) 607-623
  • Gallais A., Editions Quae .. (2015) Pour comprendre l'amélioration des plantes. Enjeux, méthodes, objectifs et critères de sélection. ,
  • Grigolon S., Sollich P., Martin OC.. (2015) Modelling the emergence of polarity patterns for the intercellular transport of auxin in plants. Journal of the Royal Society, Interface / the Royal Society, 106 (12)
  • Guitard J., Atanasova R., Brossas JY., Meyer I., Gits M., Marinach C., Vellaissamy S., Angoulvant A. , Mazier D., Hennequin C.. (2015) Candida inconspicua and Candida norvegensis: new insights into identification in relation to sexual reproduction and genome organization. Journal of clinical microbiology, 5 (53) 1655-61
  • Henry A., 2015-12-17 17/12/15, Modélisation cinétique du métabolisme : construction du modèle, analyse et applications biotechnologiques
  • Hummel M., Dobrenel T., Cordewener JJ., Davanture M. , Meyer C., Smeekens SJ., Bailey-Serres J., America TA., Hanson J.. (2015) Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes. Journal of proteomics, (128) 436-49
  • Jabbour F., Udron M., Le Guilloux M. , Goncalves B., Manicacci D. , Nadot S., Damerval C. . (2015) Flower development schedule and AGAMOUS-like gene expression patterns in two morphs of Nigella damascena (Ranunculaceae) differing in floral architecture. Bot J Linn Soc, 4 (178) 608-619
  • Jabbour F., Nadot S., Espinosa F., Damerval C. . (2015) Ranunculacean flower terata: Records, a classification, and some clues about floral developmental genetics and evolution. Flora, (217) 64-74
  • Jaureguiberry S., Thellier M., Ndour PA., Ader F., Roussel C., Sonneville R., Mayaux J., Matheron S., Angoulvant A. , Wyplosz B., Rapp C., Pistone T., Lebrun-Vignes B., Kendjo E., Danis M., Houze S., Bricaire F., Mazier D., Buffet P., Caumes E.. (2015) Delayed-onset hemolytic anemia in patients with travel-associated severe malaria treated with artesunate, France, 2011-2013. Emerging infectious diseases, 5 (21) 804-12
  • Lanternier F., Barbati E., Meinzer U., Liu L., Pedergnana V., Migaud M., Heritier S., Chomton M., Fremond ML., Gonzales E., Galeotti C., Romana S., Jacquemin E., Angoulvant A. , Bidault V., Canioni D., Lachenaud J., Mansouri D., Mahdaviani SA., Adimi P., Mansouri N., Jamshidi M., Bougnoux ME., Abel L., Lortholary O., Blanche S., Casanova JL., Picard C., Puel A.. (2015) Inherited CARD9 deficiency in 2 unrelated patients with invasive Exophiala infection. The Journal of infectious diseases, 8 (211) 1241-50
  • Legrand J. , Temime L., Lawrence C., Herrmann JL., Boelle PY., Guillemot D.. (2015) Occupational Determinants of Methicillin-Resistant Staphylococcus aureus Colonization Among Healthcare Workers: A Longitudinal Study in a Rehabilitation Center. Infect. Control Hosp. Epidemiol., 7 (36) 767-776
  • Obadia T., Silhol R., Opatowski L., Temime L., Legrand J. , Thiebaut AC., Herrmann JL., Fleury E., Guillemot D., Boelle PY.. (2015) Detailed Contact Data and the Dissemination of Staphylococcus aureus in Hospitals. PLoS computational biology, 3 (11) e1004170
  • Osborne AJ., Pearson J., Negro SS., Chilvers BL., Kennedy MA., Gemmell NJ.. (2015) Heterozygote advantage at MHC DRB may influence response to infectious disease epizootics. Molecular ecology, 7 (24) 1419-32
  • Oury FX., Lasme P., Michelet C., Rousset M., Abecassis J., Lullien-Pellerin V.. (2015) Relationships between wheat grain physical characteristics studied through near-isogenic lines with distinct puroindoline-b allele. Theor Appl Genet, 5 (128) 913-29
  • Poncet V., Scutt C., Tournebize R., Villegente M., Cueff G., Rajjou L., Balliau T. , Zivy M. , Fogliani B., Job C., de Kochko A., Sarramegna-Burtet V., Job D.. (2015) The Amborella vacuolar processing enzyme family. Frontiers in plant science, (6) 618
  • Ressayre A. , Glemin S., Montalent P. , Serre-Giardi L., Dillmann C. , Joets J. . (2015) Introns Structure Patterns of Variation in Nucleotide Composition in Arabidopsis thaliana and Rice Protein-Coding Genes. Genome biology and evolution, 10 (7) 2913-28
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