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Génétique Quantitative et Évolution - Le Moulon

Publications

2021

Mazé A, Calabuig Domenech A, Goldringer I. (2021) Restoring cultivated agrobiodiversity: The political ecology of knowledge networks between local peasant seed groups in France. Ecological Economics, (179) 106821

2020

Allier A, 20 janvier 2020, Contributions to genetic diversity management in maize breeding programs using genomic selection
Allier A, Teyssèdre S, Lehermeier C, Charcosset A, Moreau L. (2020) Genomic prediction with a maize collaborative panel: identification of genetic resources to enrich elite breeding programs. Theor Appl Genet, 1 (133) 201-215
Allier A, Teyssèdre S, Lehermeier C, Moreau L, Charcosset A. (2020) Optimized breeding strategies to harness genetic resources with different performance levels. BMC Genomics, 1 (21) 349
Arca M, Mary-Huard T, Gouesnard B, Bérard A, Bauland C, Combes V, Madur D, Charcosset A, Nicolas SD. (2020) Deciphering the genetic diversity of landraces with high-throughput SNP genotyping of DNA bulks: methodology and application to the maize 50k array. bioRxiv,
Arca M, Gouesnard B, Mary-Huard T, Le Paslier MC, Bauland C, Combes V, Madur D, Charcosset A, Nicolas SD. (2020) Genome-wide SNP genotyping of DNA pools identifies untapped landraces and genomic regions that could enrich the maize breeding pool. ,
Badouin H, Velt A, Gindraud F, Flutre T, Dumas V, Vautrin S, Marande W, Corbi J, Sallet E, Ganofsky J, Santoni S, Guyot D, Ricciardelli E, Jepsen K, Käfer J, Berges H, Duchêne E, Picard F, Hugueney P, Tavares R, Bacilieri R, Rustenholz C, Marais GAB. (2020) The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication. Genome Biol, 1 (21) 223
Benoist R, Capdevielle‐Dulac C, Chantre C, Jeannette R, Calatayud PA, Drezen JM, Dupas S, Le Rouzic A, Le Ru B, Moreau L, Van Dijk E, Kaiser L, Mougel F. (2020) Quantitative Trait Loci involved in the reproductive success of a parasitoid wasp. Mol Ecol, mec.15567
Blein-Nicolas M, Negro SS, Balliau T, Welcker C, Cabrera-Bosquet L, Nicolas SD, Charcosset A, Zivy M. (2020) A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize. Genome Res., 11 (30) 1593-1604
Carrillo-Perdomo E, Vidal A, Kreplak J, Duborjal H, Leveugle M, Duarte J, Desmetz C, Deulvot C, Raffiot B, Marget P, Tayeh N, Pichon JP, Falque M, Martin OC, Burstin J, Aubert G. (2020) Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map. Sci Rep, 1 (10) 6790
Carrive L, Domenech B, Sauquet H, Jabbour F, Damerval C, Nadot S. (2020) Insights into the ancestral flowers of Ranunculales. Botanical Journal of the Linnean Society, 1 (194) 23-46
Castelletti S, Coupel-Ledru A, Granato I, Palaffre C, Cabrera-Bosquet L, Tonelli C, Nicolas SD, Tardieu F, Welcker C, Conti L, de Meaux J. (2020) Maize adaptation across temperate climates was obtained via expression of two florigen genes. PLoS Genet, 7 (16) e1008882
Chetouhi C, Masseret E, Satta CT, Balliau T, Laabir M, Jean N. (2020) Intraspecific variability in membrane proteome, cell growth, and morphometry of the invasive marine neurotoxic dinoflagellate Alexandrium pacificum grown in metal-contaminated conditions. Science of The Total Environment, (715) 136834
David O, van Frank G, Goldringer I, Rivière P, Turbet Delof M. (2020) Bayesian inference of natural selection from spatiotemporal phenotypic data. Theoretical Population Biology, (131) 00-109
De Oliveira Y, Burlot L, Dawson JC, Goldringer I, Madi D, Rivière P, Steinbach D, van Frank G, Thomas M. (2020) SHiNeMaS: a web tool dedicated to seed lots history, phenotyping and cultural practices. Plant Methods, 1 (16) 98
Denecker T, Zhou Li Y, Fairhead C, Budin K, Camadro JM, Bolotin-Fukuhara M, Angoulvant A, Lelandais G. (2020) Functional networks of co-expressed genes to explore iron homeostasis processes in the pathogenic yeast Candida glabrata. NAR Genomics and Bioinformatics, 2 (2) lqaa027
Diouf I, Derivot L, Koussevitzky S, Carretero Y, Bitton F, Moreau L, Causse M, Rebetzke G. (2020) Genetic basis of phenotypic plasticity and genotype × environment interactions in a multi-parental tomato population. Journal of Experimental Botany, eraa265
Espinosa F, Damerval C, Le Guilloux M, Deroin T, Wang W, Pinedo-Castro M, Nadot S, Jabbour F. (2020) Homeosis and delayed floral meristem termination could account for abnormal flowers in cultivars of Delphinium and Aquilegia (Ranunculaceae). Botanical Journal of the Linnean Society, boaa063
Falque M, Jebreen K, Paux E, Knaak C, Mezmouk S, Martin OC. (2020) CNVmap: A Method and Software To Detect and Map Copy Number Variants from Segregation Data. Genetics, 3 (214) 561-576
Goldringer I, van Frank G, Bouvier d’Yvoire C, Forst E, Galic N, Garnault M, Locqueville J, Pin S, Bailly J, Baltassat R, Berthellot JF, Caizergues F, Dalmasso C, de Kochko P, Gascuel JS, Hyacinthe A, Lacanette J, Mercier F, Montaz H, Ronot B, Rivière P. (2020) Agronomic Evaluation of Bread Wheat Varieties from Participatory Breeding: A Combination of Performance and Robustness. Sustainability, 1 (12) 128
Hanemian M, Vasseur F, Marchadier E, Gilbault E, Bresson J, Gy I, Violle C, Loudet O. (2020) Natural variation at FLM splicing has pleiotropic effects modulating ecological strategies in Arabidopsis thaliana. Nat Commun, 1 (11) 4140
Harlé O, Legrand J, Tesnière C, Pradal M, Mouret JR, Nidelet T, Ohya Y. (2020) Investigations of the mechanisms of interactions between four non-conventional species with Saccharomyces cerevisiae in oenological conditions. PLoS ONE, 5 (15) e0233285
Henry V, Saïs F, Inizan O, Marchadier E, Dibie J, Goelzer A, Fromion V. (2020) BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint. BMC Bioinformatics, 1 (21) 327
Jabbour F, Pasquier PED, Chazalviel L, Guilloux ML, Condee Silva N, Deveaux Y, Manicacci D, Galipot P, Heiss AG, Damerval C. (2020) Evolution of the distribution area of the Mediterranean Nigella damascena and a likely multiple molecular origin of its perianth dimorphism. Flora, 151735
Kilani J, Davanture M, Simon A, Zivy M, Fillinger S. (2020) Comparative quantitative proteomics of osmotic signal transduction mutants in Botrytis cinerea explain mutant phenotypes and highlight interaction with cAMP and Ca2+ signalling pathways. Journal of Proteomics, (212) 103580
Lopez Arias DC, Chastellier A, Thouroude T, Bradeen J, Van Eck L, De Oliveira Y, Paillard S, Foucher F, Hibrand-Saint Oyant L, Soufflet-Freslon V. (2020) Characterization of black spot resistance in diploid roses with QTL detection, meta-analysis and candidate-gene identification. Theor Appl Genet,
Lorant A, Ross-Ibarra J, Tenaillon M, Dutheil JY. (2020) Genomics of Long- and Short-Term Adaptation in Maize and Teosintes. , 289-311
Luo J, Havé M, Clément G, Tellier F, Balliau T, Launay-Avon A, Guérard F, Zivy M, Masclaux-Daubresse C. (2020) Integrating multiple omics to dissect the common and specific molecular changes occurring in Arabidopsis thaliana (L.) under nitrate and sulfate chronic limitations. Journal of Experimental Botany, eraa337
Maroc L, Zhou-Li Y, Boisnard S, Fairhead C. (2020) A single Ho-induced double-strand break at the MAT locus is lethal in Candida glabrata. PLoS Genet, 10 (16) e1008627
Mazé A, Calabuig Domenech A, Goldringer I. (2020) Commoning the seeds: alternative models of collective action and open innovation within French peasant seed groups for recreating local knowledge commons. Agric Hum Values,
Rio S, Mary-Huard T, Moreau L, Bauland C, Palaffre C, Madur D, Combes V, Charcosset A, Springer NM. (2020) Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering. PLoS Genet, 3 (16) e1008241
Rio S, Moreau L, Charcosset A, Mary-Huard T. (2020) Accounting for Group-Specific Allele Effects and Admixture in Genomic Predictions: Theory and Experimental Evaluation in Maize. Genetics, 1 (216) 27-41
Sanane I, Legrand J, Dillmann C, Marion-Poll F. (2020) A semi-automated design for high-throughput Lepidoptera larvae feeding bioassays. bioRxiv, 2020.08.02.232256
Sanane I, 20 octobre 2020, Composantes de la dynamique de l’interaction entre le maïs et les insectes lépidoptères foreurs de tige
Saux M, Ponnaiah M, Langlade N, Zanchetta C, Balliau T, El‐Maarouf‐Bouteau H, Bailly C. (2020) A multiscale approach reveals regulatory players of water stress responses in seeds during germination. Plant Cell Environ, 5 (43) 1300-1313
Seye AI, Bauland C, Charcosset A, Moreau L. (2020) Revisiting hybrid breeding designs using genomic predictions: simulations highlight the superiority of incomplete factorials between segregating families over topcross designs. Theor Appl Genet, 6 (133) 1995-2010
Tcherkez G, Carroll A, Abadie C, Mainguet S, Davanture M, Zivy M. (2020) Protein synthesis increases with photosynthesis via the stimulation of translation initiation. Plant Science, (291) 110352
Tello J, Torres-Pérez R, Flutre T, Grimplet J, Ibáñez J. (2020) VviUCC1 Nucleotide Diversity, Linkage Disequilibrium and Association with Rachis Architecture Traits in Grapevine. Genes, 6 (11) 598
Zhou Li Y, Boisnard S, Enache‐Angoulvant A, Fairhead C. (2020) Genome editing in the yeast Nakaseomyces delphensis and description of its complete sexual cycle. Yeast, yea.3522
de Vienne D, Fiévet JB. (2020) The Pitfalls of Heterosis Coefficients. Plants, 7 (9) 875
van Frank G, Rivière P, Pin S, Baltassat R, Berthellot JF, Caizergues F, Dalmasso C, Gascuel JS, Hyacinthe A, Mercier F, Montaz H, Ronot B, Goldringer I. (2020) Genetic Diversity and Stability of Performance of Wheat Population Varieties Developed by Participatory Breeding. Sustainability, 1 (12) 384

2019

Aguirre‐Liguori JA, Gaut BS, Jaramillo‐Correa JP, Tenaillon MI, Montes‐Hernández S, García‐Oliva F, Hearne SJ, Eguiarte LE. (2019) Divergence with gene flow is driven by local adaptation to temperature and soil phosphorus concentration in teosinte subspecies (Zea mays parviglumis and Zea mays mexicana ). Mol Ecol, 11 (28) 2814-2830
Allier A, Moreau L, Charcosset A, Teyssèdre S, Lehermeier C. (2019) Usefulness Criterion and Post-selection Parental Contributions in Multi-parental Crosses: Application to Polygenic Trait Introgression. G3: Genes, Genomes, Genetics, 5 (9) 1469-1479
Allier A, Teyssèdre S, Lehermeier C, Claustres B, Maltese S, Melkior S, Moreau L, Charcosset A. (2019) Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a North European grain maize program. Theor Appl Genet, 5 (132) 1321-1334
Allier A, Lehermeier C, Charcosset A, Moreau L, Teyssèdre S. (2019) Improving Short- and Long-Term Genetic Gain by Accounting for Within-Family Variance in Optimal Cross-Selection. Front. Genet., (10) 1006
Bancel E, Bonnot T, Davanture M, Alvarez D, Zivy M, Martre P, Déjean S, Ravel C. (2019) Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition. Front. Plant Sci., (10) 832
Belouah I, Nazaret C, Pétriacq P, Prigent S, Bénard C, Mengin V, Blein-Nicolas M, Denton AK, Balliau T, Augé S, Bouchez O, Mazat JP, Stitt M, Usadel B, Zivy M, Beauvoit B, Gibon Y, Colombié S. (2019) Modeling Protein Destiny in Developing Fruit. Plant Physiology, 3 (180) 1709-1724
Belouah I, Blein-Nicolas M, Balliau T, Gibon Y, Zivy M, Colombié S. (2019) Peptide filtering differently affects the performances of XIC-based quantification methods. J Proteomics, (193) 131-141
Bienvenut W, 2 décembre 2019, Des débuts de la protéomique à l'acétylation N-terminale des protéines chez les plantes
Boussardon C, Martin-Magniette ML, Godin B, Benamar A, Vittrant B, Citerne S, Mary-Huard T, Macherel D, Rajjou L, Budar F. (2019) Novel Cytonuclear Combinations Modify Arabidopsis thaliana Seed Physiology and Vigor. Front Plant Sci, (10) 32
Carreté L, Ksiezopolska E, Gómez-Molero E, Angoulvant A, Bader O, Fairhead C, Gabaldón T. (2019) Genome Comparisons of Candida glabrata Serial Clinical Isolates Reveal Patterns of Genetic Variation in Infecting Clonal Populations. Frontiers in Microbiology, (10) 112
Chauffour F, Bailly M, Perreau F, Cueff G, Suzuki H, Collet B, Frey A, Clément G, Soubigou-Taconnat L, Balliau T, Krieger-Liszkay A, Rajjou L, Marion-Poll A. (2019) Multi-omics Analysis Reveals Sequential Roles for ABA during Seed Maturation. Plant Physiol., 2 (180) 1198-1218
Cornille A, Antolín F, Garcia E, Vernesi C, Fietta A, Brinkkemper O, Kirleis W, Schlumbaum A, Roldán-Ruiz I. (2019) A Multifaceted Overview of Apple Tree Domestication. Trends in Plant Science, 8 (24) 770 - 782
Courret C, Gérard PR, Ogereau D, Falque M, Moreau L, Montchamp-Moreau C. (2019) X-chromosome meiotic drive in Drosophila simulans: a QTL approach reveals the complex polygenic determinism of Paris drive suppression. Heredity, 6 (122) 906-915
Cui J, Davanture M, Zivy M, Lamade E, Tcherkez G. (2019) Metabolic responses to potassium availability and waterlogging reshape respiration and carbon use efficiency in oil palm. New Phytologist, 1 (223) 310-322
Damerval C, Citerne H, Conde E Silva N, Deveaux Y, Delannoy E, Joets J, Simonnet F, Staedler Y, Schönenberger J, Yansouni J, Le Guilloux M, Sauquet H, Nadot S. (2019) Unraveling the Developmental and Genetic Mechanisms Underpinning Floral Architecture in Proteaceae. Front Plant Sci, (10) 18
Duruflé H, Ranocha P, Balliau T, Dunand C, Jamet E. (2019) Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at optimal or sub-optimal temperature. Data in Brief, (27) 104581
Fairhead C, Fischer G, Liti G, Neuveglise C, Schacherer J. (2019) Andre Goffeau's imprinting on second generation yeast "genomologists". Yeast, 4 (36) 167-175
Flutre T, Diot J, David J. (2019) PlantBreedGame: A Serious Game that Puts Students in the Breeder’s Seat. Crop Science, 0 (52) 1-2
Forst E, Enjalbert J, Allard V, Ambroise C, Krissaane I, Mary-Huard T, Robin S, Goldringer I. (2019) A generalized statistical framework to assess mixing ability from incomplete mixing designs using binary or higher order variety mixtures and application to wheat. Field Crops Research, (242) 107571
Fustier MA, Martínez-Ainsworth NE, Aguirre-Liguori JA, Venon A, Corti H, Rousselet A, Dumas F, Dittberner H, Camarena MG, Grimanelli D, Ovaskainen O, Falque M, Moreau L, Meaux J, Montes-Hernández S, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI. (2019) Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude. PLOS Genetics, 12 (15) e1008512
Gabaldón T, Fairhead C. (2019) Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal. Curr. Genet., 1 (65) 93-98
Hartmann FE, Rodríguez de la Vega RC, Carpentier F, Gladieux P, Cornille A, Hood ME, Giraud T. (2019) Understanding Adaptation, Coevolution, Host Specialization, and Mating System in Castrating Anther-Smut Fungi by Combining Population and Comparative Genomics. Annu. Rev. Phytopathol., 1 (57) annurev-phyto-082718-095947
Havé M, Luo J, Tellier F, Balliau T, Cueff G, Chardon F, Zivy M, Rajjou L, Cacas JL, Masclaux‐Daubresse C. (2019) Proteomic and lipidomic analyses of the Arabidopsis atg5 autophagy mutant reveal major changes in ER and peroxisome metabolisms and in lipid composition. New Phytol, 3 (223) 1461-1477
Henry C, Haller L, Blein-Nicolas M, Zivy M, Canette A, Verbrugghe M, Mézange C, Boulay M, Gardan R, Samson S, Martin V, André-Leroux G, Monnet V. (2019) Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome. Front. Microbiol., (10) 1329
Jebreen K, Petrizzelli M, Martin OC. (2019) Probabilities of Multilocus Genotypes in SIB Recombinant Inbred Lines. Front. Genet., (10) 833
Kreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d’Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee HT, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar’an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. (2019) A reference genome for pea provides insight into legume genome evolution. Nat Genet, 9 (51) 1411-1422
Lecarpentier C, Barillot R, Blanc E, Abichou M, Goldringer I, Barbillon P, Enjalbert J, Andrieu B. (2019) WALTer: a three-dimensional wheat model to study competition for light through the prediction of tillering dynamics. Ann Bot, 6 (123) 961-975
Liu S, Cornille A, Decroocq S, Tricon D, Chague A, Eyquard JP, Liu WS, Giraud T, Decroocq V. (2019) The complex evolutionary history of apricots: species divergence, gene flow and multiple domestication events. Mol Ecol, mec.15296
Mabire C, 2019-04-23 23/04/19, Contribution des variations structurales de type insertions/délétions à l'adaptation, la variation des caractères et les performances hybrides chez le maïs
Mabire C, Duarte J, Darracq A, Pirani A, Rimbert H, Madur D, Combes V, Vitte C, Praud S, Rivière N, Joets J, Pichon JP, Nicolas SD. (2019) High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array. BMC Genomics, 1 (20) 848
Mangin B, Rincent R, Rabier CE, Moreau L, Goudemand-Dugue E. (2019) Training set optimization of genomic prediction by means of EthAcc. PLOS ONE, 2 (14) e0205629
Maroc L, Fairhead C. (2019) A new inducible CRISPR‐Cas9 system useful for genome editing and study of double‐strand break repair in Candida glabrata. Yeast, 12 (36) 723-731
Martinez Palacios P, Jacquemot MP, Tapie M, Rousselet A, Diop M, Remoué C, Falque M, Lloyd A, Jenczewski E, Lassalle G, Chévre AM, Lelandais C, Crespi M, Brabant P, Joets J, Alix K. (2019) Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus Allotetraploids. Mol Biol Evol, 4 (36) 709-726
Martinez N, 25/10/2019, Characterizing the genomic determinants and phenotypic responses to altitudinal adaptation in teosintes (Zea mays ssp. parviglumis and ssp. mexicana)
Millet EJ, Kruijer W, Coupel-Ledru A, Prado SA, Cabrera-Bosquet L, Lacube S, Charcosset A, Welcker C, Eeuwijk F, Tardieu F. (2019) Genomic prediction of maize yield across European environmental conditions. Nat Genet, 6 (51) 952-956
Negro SS, Millet EJ, Madur D, Bauland C, Combes V, Welcker C, Tardieu F, Charcosset A, Nicolas SD. (2019) Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies. BMC Plant Biol., 1 (19) 318
Peace CP, Bianco L, Troggio M, van de Weg E, Howard NP, Cornille A, Durel CE, Myles S, Migicovsky Z, Schaffer RJ, Costes E, Fazio G, Yamane H, van Nocker S, Gottschalk C, Costa F, Chagné D, Zhang X, Patocchi A, Gardiner SE, Hardner C, Kumar S, Laurens F, Bucher E, Main D, Jung S, Vanderzande S. (2019) Apple whole genome sequences: recent advances and new prospects. Hortic Res, 1 (6) 59
Petrizzelli M, de Vienne D, Dillmann C. (2019) Decoupling the Variances of Heterosis and Inbreeding Effects Is Evidenced in Yeast's Life-History and Proteomic Traits. Genetics, 2 (211) 741-756
Petrizzelli M, 8 juillet 2019, Mathematical modelling and integration of complex biological data: analysis of the heterosis phenomenon in yeas
Rio S, 2019-04-26 26/04/19, Contributions to genomic selection and association mapping in structured and admixed populations : application to maize
Rio S, Mary-Huard T, Moreau L, Charcosset A. (2019) Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel. Theor Appl Genet, 1 (132) 81-96
Ruhsam M, Jessop W, Cornille A, Renny J, Worrell R. (2019) Crop-to-wild introgression in the European wild apple Malus sylvestris in Northern Britain. Forestry (Lond), 1 (92) 85-96
Rusconi F. (2019) mineXpert: Biological Mass Spectrometry Data Visualization and Mining with Full JavaScript Ability. J. Proteome Res., 5 (18) 2254-2259
Scarcelli N, Cubry P, Akakpo R, Thuillet AC, Obidiegwu J, Baco MN, Otoo E, Sonké B, Dansi A, Djedatin G, Mariac C, Couderc M, Causse S, Alix K, Chaïr H, François O, Vigouroux Y. (2019) Yam genomics supports West Africa as a major cradle of crop domestication. Sci. Adv., 5 (5) eaaw1947
Seye A, 2019-03-21 21/03/19, Prédiction assistée par marqueurs de la performance hybride dans un schéma de sélection réciproque : simulations et évaluation expérimentale pour le maïs ensilage
Seye AI, Bauland C, Giraud H, Mechin V, Reymond M, Charcosset A, Moreau L. (2019) Quantitative trait loci mapping in hybrids between Dent and Flint maize multiparental populations reveals group-specific QTL for silage quality traits with variable pleiotropic effects on yield. Theor Appl Genet, 5 (132) 1523-1542
Srisuwan S, Sihachakr D, Martin J, Valles J, Ressayre A, Brown SC, Siljak-Yakovlev S. (2019) Change in nuclear DNA content and pollen size with polyploidisation in the sweet potato (Ipomoea batatas, Convolvulaceae) complex. Plant Biol (Stuttg), 2 (21) 237-247
Termolino P, Falque M, Aiese Cigliano R, Cremona G, Paparo R, Ederveen A, Martin OC, Consiglio FM, Conicella C. (2019) Recombination suppression in heterozygotes for a pericentric inversion induces the interchromosomal effect on crossovers in Arabidopsis. Plant J, 6 (100) 1163-1175
Tourrette E, 25 novembre 2019, Unleashing genetic diversity in breeding by increasing recombination: an in silico study
Tourrette E, Bernardo R, Falque M, Martin OC. (2019) Assessing by Modeling the Consequences of Increased Recombination in Recurrent Selection of Oryza sativa and Brassica rapa. G3, 12 (9) 4169-4181
Urien C, Legrand J, Montalent P, Casaregola S, Sicard D. (2019) Fungal Species Diversity in French Bread Sourdoughs Made of Organic Wheat Flour. Front. Microbiol., (10) 201
Vasseur F, Fouqueau L, de Vienne D, Nidelet T, Violle C, Weigel D. (2019) Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana. PLoS Biol, 4 (17) e3000214
Virlouvet L, El Hage F, Griveau Y, Jacquemot MP, Gineau E, Baldy A, Legay S, Horlow C, Combes V, Bauland C, Palafre C, Falque M, Moreau L, Coursol S, Méchin V, Reymond M. (2019) Water Deficit-Responsive QTLs for Cell Wall Degradability and Composition in Maize at Silage Stage. Front. Plant Sci., (10) 488
Volk GM, Cornille A, Korban SS. (2019) Genetic Diversity and Domestication History in Pyrus. , 51-62
van Frank G, Goldringer I, Rivière P, David O. (2019) Influence of experimental design on decentralized, on-farm evaluation of populations: a simulation study. Euphytica, 7 (215) 126

2018

Grigolon S., Bravi B., Martin O. C.. (2018) Responses to auxin signals: an operating principle for dynamical sensitivity yet high resilience. Royal Society Open Science, 1 (5) 172098
Achour Z, 2018-05-15 15/05/18, Réponse du méthylome suite à l’exposition au froid chez une espèce à génome complexe : le maïs (Zea mays ssp. mays)
Akakpo R, 2018-05-16 16/05/18, Étude de la domestication et de l’adaptation de l’igname (Dioscorea spp) en Afrique par des approches génomiques
Alaux M, Rogers J, Letellier T, Flores R, Alfama F, Pommier C, Mohellibi N, Durand S, Kimmel E, Michotey C, Guerche C, Loaec M, Lainé M, Steinbach D, Choulet F, Rimbert H, Leroy P, Guilhot N, Salse J, Feuillet C, Paux E, Eversole K, Adam-Blondon AF, Quesneville H, International Wheat Genome Sequencing Consortium. (2018) Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. Genome Biol, 1 (19) 111
Albert B, Ressayre A, Dillmann C, Carlson AL, Swanson RJ, Gouyon PH, Dobritsa AA. (2018) Effect of aperture number on pollen germination, survival and reproductive success in Arabidopsis thaliana. Ann. Bot., 4 (121) 733-740
Ali S, Sharma S, Leconte M, Shah SJA, Duveiller E, Enjalbert J, Vallavieille‐Pope C. (2018) Low pathotype diversity in a recombinant Puccinia striiformis population through convergent selection at the eastern Himalayan centre of diversity (Nepal). Plant Pathology, 4 (67) 810-820
Aloui A, Recorbet G, Lemaître-Guillier C, Mounier A, Balliau T, Zivy M, Wipf D, Dumas-Gaudot E. (2018) The plasma membrane proteome of Medicago truncatula roots as modified by arbuscular mycorrhizal symbiosis. Mycorrhiza, 1 (28) 1-16
Balliau T, Blein-Nicolas M, Zivy M. (2018) Evaluation of Optimized Tube-Gel Methods of Sample Preparation for Large-Scale Plant Proteomics. Proteomes, 1 (6) 6
Berrabah F, Balliau T, Ait-Salem EH, George J, Zivy M, Ratet P, Gourion B. (2018) Control of the ethylene signaling pathway prevents plant defenses during intracellular accommodation of the rhizobia. The New phytologist, 1 (219) 310-323
Bichang'a G, Da Lage JL, Capdevielle-Dulac C, Zivy M, Balliau T, Sambai K, Le Ru B, Kaiser L, Juma G, Maina ENM, Calatayud PA. (2018) alpha-Amylase Mediates Host Acceptance in the Braconid Parasitoid Cotesia flavipes. J Chem Ecol, 11 (44) 1030-1039
Borg J, Kiær LP, Lecarpentier C, Goldringer I, Gauffreteau A, Saint-Jean S, Barot S, Enjalbert J. (2018) Unfolding the potential of wheat cultivar mixtures: A meta-analysis perspective and identification of knowledge gaps. Field Crops Res, (221) 298-313
Carbonetto B, Ramsayer J, Nidelet T, Legrand J, Sicard D. (2018) Bakery yeasts, a new model for studies in ecology and evolution. Yeast, 11 (35) 591-603
Carrete L, Ksiezopolska E, Pegueroles C, Gomez-Molero E, Saus E, Iraola-Guzman S, Loska D, Bader O, Fairhead C, Gabaldon T. (2018) Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans. Current biology : CB, 1 (28) 15-27 e7
Celisse A, Mary-Huard T. (2018) Theoretical Analysis of Cross-Validation for Estimating the Risk of the $k$-Nearest Neighbor Classifier. Journal of Machine Learning Research, 58 (19) 1-54
Collot D, Nidelet T, Ramsayer J, Martin OC, Meleard S, Dillmann C, Sicard D, Legrand J. (2018) Feedback between environment and traits under selection in a seasonal environment: consequences for experimental evolution. Proceedings. Biological sciences, 1876 (285)
Collot D, 2018-06-19 19/06/18, Modélisation des dynamiques adaptatives de la levure de boulanger S. cerevisae dans un environnement saisonnier
Damerval C, Othman WB, Manicacci D, Jabbour F. (2018) Distribution area of the two floral morphs of Nigella damascena L. (Ranunculaceae): A diachronic study using herbarium specimens collected in France. Botany Letters, 3-4 (165) 396-403
Dard-Dascot C, Naquin D, d'Aubenton-Carafa Y, Alix K, Thermes C, van Dijk E. (2018) Systematic comparison of small RNA library preparation protocols for next-generation sequencing. BMC genomics, 1 (19) 118
Darracq A, Vitte C, Nicolas S, Duarte J, Pichon JP, Mary-Huard T, Chevalier C, Bérard A, Le Paslier MC, Rogowsky P, Charcosset A, Joets J. (2018) Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants. BMC Genomics, 1 (19) 119
Fiévet JB, Nidelet T, Dillmann C, de Vienne D. (2018) Heterosis Is a Systemic Property Emerging From Non-linear Genotype-Phenotype Relationships: Evidence From in Vitro Genetics and Computer Simulations. Front. Genet., (9)
Forst E, 2018-03-29 29/03/18, Développement de méthodes d'estimation de l'aptitude au mélange pour la prédiction des performances et la sélection de mélanges variétaux chez le blé tendre, et co-conception d'idéotypes de mélanges adaptés à l'agriculture biologique
Havé M, Balliau T, Cottyn-Boitte B, Dérond E, Cueff G, Soulay F, Lornac A, Reichman P, Dissmeyer N, Avice JC, Gallois P, Rajjou L, Zivy M, Masclaux-Daubresse C. (2018) Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?. J Exp Bot, 6 (69) 1369-1385
Joets J, Vitte C, Charcosset A, Bennetzen J, Flint-Garcia S, Hirsch C, Tuberosa R. (2018) Draft assembly of the F2 European maize genome sequence and its comparison to the B73 genome sequence: a characterization of genotype-specific regions.. , In Press
Käfer J, Betancourt A, Villain AS, Fernandez M, Vignal C, Marais GAB, Tenaillon MI. (2018) Progress and Prospects in Gender Visibility at SMBE Annual Meetings. Genome Biol Evol, 3 (10) 901-908
Lamichhane JR, Arseniuk E, Boonekamp P, Czembor J, Decroocq V, Enjalbert J, Finckh MR, Korbin M, Koppel M, Kudsk P, Mesterhazy A, Sosnowska D, Zimnoch‐Guzowska E, Messéan A. (2018) Advocating a need for suitable breeding approaches to boost integrated pest management: a European perspective. Pest Management Science, 6 (74) 1219-1227
Laporte F, 2018-03-13 13/03/18, Développement de méthodes statistiques pour l’identification de gènes d’intérêt en présence d’apparentement et de dominance, application à la génétique du maïs
Lorant A, Ross-Ibarra J, Tenaillon MI, Dutheil JY. (2018) Genomics of long- and short- term adaptation in maize and teosintes. , (accepted) in press
Lorant A, 2018-03-28 28/03/18, Plasticité et adaptation génétique comme contributeurs de l'histoire évolutive du maïs cultivé et des formes sauvages apparentées
Odonkor S, Choi S, Chakraborty D, Martinez-Bello L, Wang X, Bahri BA, Tenaillon MI, Panaud O, Devos KM. (2018) QTL Mapping Combined With Comparative Analyses Identified Candidate Genes for Reduced Shattering in Setaria italica. Front. Plant Sci., (9)
Oury FX, Heumez E, Rolland B, Auzanneau J, Bérard P, Brancourt-Hulmel M, Charrier X, Chiron H, Depatureaux C, Falchetto L, Gardet O, Gilles S, Giraud A, Lecomte C, Jean-Yves Morlais , Pluchard P, Tropée D, Trottet M, Walczak P, Doussinault G, Rousset M, Charmet G, Oury FX, Charmet G, Pommier C. (2018) Winter wheat (Triticum aestivum L) phenotypic data from the multiannual, multilocal field trials of the INRA Small Grain Cereals Network. ,
Perronne R, Goldringer I. (2018) Application of a partitioning procedure based on Rao quadratic entropy index to characterize the temporal evolution of in situ varietal and genetic diversity of bread wheat in France over the period 1981–2006. Theor Appl Genet, 4 (131) 775-786
Raffoux X, 2018-06-11 06/11/18, Diversité et déterminisme génétique de la recombinaison méiotique chez Saccharomyces cerevisiae
Raffoux X, Bourge M, Dumas F, Martin OC, Falque M. (2018) High-throughput measurement of recombination rates and genetic interference in Saccharomyces cerevisiae. Yeast, 6 (35) 431-442
Raffoux X, Bourge M, Dumas F, Martin OC, Falque M. (2018) Role of Cis, Trans, and Inbreeding Effects on Meiotic Recombination in Saccharomyces cerevisiae. Genetics, 4 (210) 1213-1226
Richard MMS, Gratias A, Thareau V, Kim KD, Balzergue S, Joets J, Jackson SA, Geffroy V. (2018) Genomic and epigenomic immunity in common bean: the unusual features of NB-LRR gene family. DNA Res, 2 (25) 161-172
Senghor Y, Guitard J, Angoulvant A, Hennequin C. (2018) Cryptococcal antigen detection in broncho-alveolar lavage fluid. Med Mycol, 6 (56) 774-777
Tenaillon MI, Sedikki K, Mollion M, Guilloux ML, Marchadier E, Ressayre A, Dillmann C. (2018) Transcriptomic response to divergent selection for flowering time in maize reveals convergence and key players of the underlying gene regulatory network. bioRxiv, 461947
Van Frank G, 2018-06-12 06/12/18, Gestion participative de la diversité cultivée et création de mélanges diversifiés de blé tendre à la ferme

2017

Adam-Blondon AF, Alaux M, Durand S, Letellier T, Merceron G, Mohellibi N, Pommier C, Steinbach D, Alfama F, Amselem J, Charruaud D, Choisne N, Flores R, Guerche C, Jamilloux V, Kimmel E, Lapalu N, Loaec M, Michotey C, Quesneville H, van Dijk ADJ. (2017) Mining Plant Genomic and Genetic Data Using the GnpIS Information System. , (1533) 103-117
Aguirre‐Liguori JA, Tenaillon MI, Vázquez‐Lobo A, Gaut BS, Jaramillo‐Correa JP, Montes‐Hernandez S, Souza V, Eguiarte LE. (2017) Connecting genomic patterns of local adaptation and niche suitability in teosintes. Molecular Ecology, 16 (26) 4226-4240
Akakpo R, Scarcelli N, Chaïr H, Dansi A, Djedatin G, Thuillet AC, Rhoné B, François O, Alix K, Vigouroux Y. (2017) Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes. BMC Genomics, 1 (18) 782
Alix K, Gérard PR, Schwarzacher T, Heslop-Harrison JSP. (2017) Polyploidy and interspecific hybridization: partners for adaptation, speciation and evolution in plants. Ann Bot, 2 (120) 183-194
Angoulvant A, ANOFEL , Houzé S, Botterel-Chartier F. (2017) Examen mycologique des prélèvements respiratoires (chap 9). , 129 -139
Baldy A, Jacquemot MP, Griveau Y, Bauland C, Reymond M, Mechin V. (2017) Energy Values of Registered Corn Forage Hybrids in France over the Last 20 Years Rose in a Context of Maintained Yield Increase. American Journal of Plant Sciences, (08) 1449
Barot S, Allard V, Cantarel A, Enjalbert J, Gauffreteau A, Goldringer I, Lata JC, Le Roux X, Niboyet A, Porcher E. (2017) Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agron. Sustain. Dev., 2 (37) 13
Bedoya CA, Dreisigacker S, Hearne S, Franco J, Mir C, Prasanna BM, Taba S, Charcosset A, Warburton ML. (2017) Genetic diversity and population structure of native maize populations in Latin America and the Caribbean. PLoS One, 4 (12)
Bolotin-Fukuhara M. (2017) Thirty years of the HAP2/3/4/5 complex. Biochim Biophys Acta Gene Regul Mech, 5 (1860) 543-559
Bonnot T, Bancel E, Alvarez D, Davanture M, Boudet J, Pailloux M, Zivy M, Ravel C, Martre P. (2017) Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum. The Plant Journal, 5 (91) 894-910
Bouchet S, Bertin P, Presterl T, Jamin P, Coubriche D, Gouesnard B, Laborde J, Charcosset A. (2017) Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits. Heredity (Edinb), 3 (118) 249-259
Brandenburg JT, Mary-Huard T, Rigaill G, Hearne SJ, Corti H, Joets J, Vitte C, Charcosset A, Nicolas SD, Tenaillon MI. (2017) Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts. PLOS Genetics, 3 (13) e1006666
Brault V, Delattre M, Lebarbier E, Mary‐Huard T, Lévy‐Leduc C. (2017) Estimating the Number of Block Boundaries from Diagonal Blockwise Matrices Without Penalization. Scandinavian Journal of Statistics, 2 (44) 563-580
Bukreyeva I, Angoulvant A, Bendib I, Gagnard JC, Bourhis JH, Dargère S, Bonhomme J, Thellier M, Gachot B, Wyplosz B. (2017) Enterocytozoon bieneusi Microsporidiosis in Stem Cell Transplant Recipients Treated with Fumagillin1. Emerg Infect Dis, 6 (23) 1039-1041
Cañas RA, Yesbergenova-Cuny Z, Simons M, Chardon F, Armengaud P, Quilleré I, Cukier C, Gibon Y, Limami AM, Nicolas S, Brulé L, Lea PJ, Maranas CD, Hirel B. (2017) Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield. The Plant Cell, 5 (29) 919-943
Citerne HL, Reyes E, Le Guilloux M, Delannoy E, Simonnet F, Sauquet H, Weston PH, Nadot S, Damerval C. (2017) Characterization of CYCLOIDEA-like genes in Proteaceae, a basal eudicot family with multiple shifts in floral symmetry. Ann Bot, 3 (119) 367-378
Damerval C, Jabbour F, Nadot S, Citerne HL, Nuno de la Rosa L, Müller G. (2017) Evolution of symmetry in plants. , 1-18
Damerval C, Becker A. (2017) Genetics of flower development in Ranunculales – a new, basal eudicot model order for studying flower evolution. New Phytologist, 2 (216) 361-366
Damerval C, Nadot S. (2017) Letter to the 21st century botanist: “What is a flower?” 6. The evo-devo of floral symmetry. Botany Letters, 3 (164) 193-196
Delatola EI, Lebarbier E, Mary-Huard T, Radvanyi F, Robin S, Wong J. (2017) SegCorr a statistical procedure for the detection of genomic regions of correlated expression. BMC Bioinformatics, 1 (18) 333
Demeulenaere Élise, Goldringer I. (2017) Semences et transition agroécologique : initiatives paysannes et sélection participative comme innovations de rupture. Nat. Sci. Soc., (25) S55-S59
Demeulenaere Élise, Rivière P, Hyacinthe A, Baltassat R, Baltazar S, Gascuel JS, Lacanette J, Montaz H, Pin S, Ranke O, Serpolay-Besson E, Thomas M, Frank GV, Vanoverschelde M, Vindras-Fouillet C, Goldringer I. (2017) La sélection participative à l’épreuve du changement d’échelle. À propos d’une collaboration entre paysans sélectionneurs et généticiens de terrain. Nat. Sci. Soc., 4 (25) 336-346
Denis E, Kbiri N, Mary V, Claisse G, Conde E Silva N, Kreis M, Deveaux Y. (2017) WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 3 (90) 560-572
Duruflé H, Hervé V, Balliau T, Zivy M, Dunand C, Jamet E. (2017) Proline Hydroxylation in Cell Wall Proteins: Is It Yet Possible to Define Rules?. Front. Plant Sci., (8)
Duruflé H, Hervé V, Ranocha P, Balliau T, Zivy M, Chourré J, San Clemente H, Burlat V, Albenne C, Déjean S, Jamet E, Dunand C. (2017) Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study. Plant Science, (263) 183-193
Duruflé H, Clemente HS, Balliau T, Zivy M, Dunand C, Jamet E. (2017) Cell wall proteome analysis of Arabidopsis thaliana mature stems. PROTEOMICS, 8 (17) 1600449
Fustier MA, Brandenburg JT, Boitard S, Lapeyronnie J, Eguiarte LE, Vigouroux Y, Manicacci D, Tenaillon MI. (2017) Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples. Molecular Ecology, 10 (26) 2738-2756
Galland M, He D, Lounifi I, Arc E, Clément G, Balzergue S, Huguet S, Cueff G, Godin B, Collet B, Granier F, Morin H, Tran J, Valot B, Rajjou L. (2017) An Integrated “Multi-Omics” Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality. Front Plant Sci, (8)
Giraud H, Bauland C, Falque M, Madur D, Combes V, Jamin P, Monteil C, Laborde J, Palaffre C, Gaillard A, Blanchard P, Charcosset A, Moreau L. (2017) Reciprocal Genetics: Identifying QTL for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups. Genetics, 3 (207) 1167-1180
Giraud H, Bauland C, Falque M, Madur D, Combes V, Jamin P, Monteil C, Laborde J, Palaffre C, Gaillard A, Blanchard P, Charcosset A, Moreau L. (2017) Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.). G3: Genes, Genomes, Genetics, g3.300121.2017
Gouesnard B, Negro S, Laffray A, Glaubitz J, Melchinger A, Revilla P, Moreno-Gonzalez J, Madur D, Combes V, Tollon-Cordet C, Laborde J, Kermarrec D, Bauland C, Moreau L, Charcosset A, Nicolas S. (2017) Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank. Theor Appl Genet, 10 (130) 2165-2189
Henry VJ, Saïs F, Marchadier E, Dibie J, Goelzer A, Fromion V. (2017) BiPOm: Biological interlocked Process Ontology for metabolism. How to infer molecule knowledge from biological process?. , np
Jean N, Dumont E, Herzi F, Balliau T, Laabir M, Masseret E, Mounier S. (2017) Modifications of the soluble proteome of a mediterranean strain of the invasive neurotoxic dinoflagellate Alexandrium catenella under metal stress conditions. Aquatic Toxicology, (188) 80-91
Langella O, Valot B, Balliau T, Blein-Nicolas M, Bonhomme L, Zivy M. (2017) X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification. J. Proteome Res., 2 (16) 494-503
Laporte F, Charcosset A, Mary‐Huard T. (2017) Estimation of the relatedness coefficients from biallelic markers, application in plant mating designs. Biometrics, 3 (73) 885-894
Larièpe A, Moreau L, Laborde J, Bauland C, Mezmouk S, Décousset L, Mary-Huard T, Fiévet JB, Gallais A, Dubreuil P, Charcosset A. (2017) General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents. Theor. Appl. Genet., 2 (130) 403-417
Lecarpentier C, 2017-01-25 25/01/17, Valorisation de la diversité intra-parcelle dans un contexte de changement climatique. Développement d'un modèle couplant écophysiologie 3D et génétique évolutive.
Mary-Huard T, 2017-06-12 06/12/17, Some contributions to statistical modeling and model selection with applications to genomics and quantitative genetics
Millan-Oropeza A, Henry C, Blein-Nicolas M, Aubert-Frambourg A, Moussa F, Bleton J, Virolle MJ. (2017) Quantitative Proteomics Analysis Confirmed Oxidative Metabolism Predominates in Streptomyces coelicolor versus Glycolytic Metabolism in Streptomyces lividans. J. Proteome Res., 7 (16) 2597-2613
Moreau L, 2017-06-13 13/06/17, Utilisation des marqueurs en sélection : des QTL à la Sélection Génomique
Negroni L, Zivy M, Lemaire C, Lacapere JJ. (2017) Mass Spectrometry of Mitochondrial Membrane Protein Complexes. , 233-246
Ousseini IS, Bakasso Y, Kane NA, Couderc M, Zekraoui L, Mariac C, Manicacci D, Rhoné B, Barnaud A, Berthouly-Salazar C, Assoumane A, Moussa D, Moussa T, Vigouroux Y. (2017) Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet. Heredity, 2 (119) 88-94
Pelé A, Falque M, Trotoux G, Eber F, Nègre S, Gilet M, Huteau V, Lodé M, Jousseaume T, Dechaumet S, Morice J, Poncet C, Coriton O, Martin OC, Rousseau-Gueutin M, Chèvre AM. (2017) Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas. PLoS Genet, 5 (13)
Perronne R, Makowski D, Goffaux R, Montalent P, Goldringer I. (2017) Temporal evolution of varietal, spatial and genetic diversity of bread wheat between 1980 and 2006 strongly depends upon agricultural regions in France. Agriculture, Ecosystems & Environment, (236) 12-20
Perronne R, Diguet S, Vallavieille-Pope C, Leconte M, Enjalbert J. (2017) A framework to characterize the commercial life cycle of crop varieties: Application to the case study of the influence of yellow rust epidemics on French bread wheat varieties. Field Crops Research, (209) 159-167
Regente M, Pinedo M, San Clemente H, Balliau T, Jamet E, de la Canal L. (2017) Plant extracellular vesicles are incorporated by a fungal pathogen and inhibit its growth. J Exp Bot, 20 (68) 5485-5495
Renvoisé M, Bonhomme L, Davanture M, Zivy M, Lemaire C, Tan AC, Huang PH. (2017) Phosphoproteomic Analysis of Isolated Mitochondria in Yeast. , 283-299
Rincent R, Charcosset A, Moreau L. (2017) Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations. Theor Appl Genet, 11 (130) 2231-2247
Rouzet A, Reboux G, Dalphin JC, Gondouin A, De Vuyst P, Balliau T, Millon L, Valot B, Roussel S. (2017) An immunoproteomic approach revealed antigenic proteins enhancing serodiagnosis performance of bird fancier's lung. Journal of Immunological Methods, (450) 58-65
Samal A, Martin OC. (2017) Haldane, Waddington and recombinant inbred lines: extension of their work to any number of genes. J. Genet., 5 (96) 795-800
Villegente M, Marmey P, Job C, Galland M, Cueff G, Godin B, Rajjou L, Balliau T, Zivy M, Fogliani B, Sarramegna-Burtet V, Job D. (2017) A Combination of Histological, Physiological, and Proteomic Approaches Shed Light on Seed Desiccation Tolerance of the Basal Angiosperm Amborella trichopoda. Proteomes, 3 (5)

2016

Ali S, Soubeyrand S, Gladieux P, Giraud T, Leconte M, Gautier A, Mboup M, Chen W, Vallavieille‐Pope C, Enjalbert J. (2016) cloncase: Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms. Molecular Ecology Resources, 4 (16) 845-861
Angoulvant A, Guitard J, Hennequin C. (2016) Old and new pathogenic Nakaseomyces species: epidemiology, biology, identification, pathogenicity and antifungal resistance. FEMS Yeast Res, 2 (16)
Berthouly‐Salazar C, Thuillet AC, Rhoné B, Mariac C, Ousseini IS, Couderc M, Tenaillon MI, Vigouroux Y. (2016) Genome scan reveals selection acting on genes linked to stress response in wild pearl millet. Molecular Ecology, 21 (25) 5500-5512
Blein-Nicolas M, Zivy M. (2016) Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 8 (1864) 883-895
Bolotin-Fukuhara M, Fairhead C. (2016) Editorial: Candida glabrata, the other yeast pathogen. FEMS Yeast Res, 2 (16)
Bougnoux ME, Dannaoui E, Accoceberry I, Angoulvant A, Bailly E, Botterel F, Chevrier S, Chouaki T, Cornet M, Dalle F, Datry A, Dupuis A, Fekkar A, Gangneux JP, Guitard J, Hennequin C, Le Govic Y, Le Pape P, Maubon D, Ranque S, Sautour M, Sendid B, Chandenier J. (2016) Multicenter Comparison of the Etest and EUCAST Methods for Antifungal Susceptibility Testing of Candida Isolates to Micafungin. Antimicrob Agents Chemother, 8 (60) 5088-5091
Boutet G, Alves Carvalho S, Falque M, Peterlongo P, Lhuillier E, Bouchez O, Lavaud C, Pilet-Nayel ML, Rivière N, Baranger A. (2016) SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population. BMC Genomics, (17)
Cossard G, Sannier J, Sauquet H, Damerval C, de Craene LR, Jabbour F, Nadot S. (2016) Subfamilial and tribal relationships of Ranunculaceae: evidence from eight molecular markers. Plant Syst Evol, 4 (302) 419-431
Desclée de Maredsous C, Oozeer R, Barbillon P, Mary-Huard T, Delteil C, Blachier F, Tomé D, van der Beek EM, Davila AM. (2016) High-Protein Exposure during Gestation or Lactation or after Weaning Has a Period-Specific Signature on Rat Pup Weight, Adiposity, Food Intake, and Glucose Homeostasis up to 6 Weeks of Age. J. Nutr., 1 (146) 21-29
Dobrenel T, Mancera-Martínez E, Forzani C, Azzopardi M, Davanture M, Moreau M, Schepetilnikov M, Chicher J, Langella O, Zivy M, Robaglia C, Ryabova LA, Hanson J, Meyer C. (2016) The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6. Front Plant Sci, (7)
Durand JL, Andrieu B, Barillot R, Barre P, Combes D, Enjalbert J, Escobar-Gutierrez A, Faverjon L, Lecarpentier C, Litrico I, Louarn G, Migault V, Sanchez L. (2016) Designing and improving mixed grasslands: advances made in modelling forage variety performance. Fourrages, 225 21-28
Enjalbert J, 2016-01-13 13/01/16, De la génétique des clones à l'agroécologie
Enjalbert J, Allard V, Andrieu B, Barot S, Borg J, Cantarel A, Feret M, Cervek C, Coleno FC, Pope De Vallavieille C, Descoureaux D, Dubs F, Galic N, Gauffreteau A, Gilet JD, Goldringer I, Hannachi M, Houivet G, Pin S, Jeuffroy MH, Kerbiriou C, Labarthe P, LATA JC, LeCarpentier C, Lejars L, Lemain B, Lemarié S, Leny F, Le Roux X, Le Viol I, Montagnier C, NIBOYET A, Omon B, Piaud S, Poly F, Pommier T, Porcher E, Saint-Jean S, Salmon S, Tropée D, Vidal T. (2016) Increasing species richness and genetic diversity in agriculture: results of the Wheatamix project. , 40 p.
Fernandez O, Urrutia M, Bernillon S, Giauffret C, Tardieu F, Le Gouis J, Langlade N, Charcosset A, Moing A, Gibon Y. (2016) Fortune telling: metabolic markers of plant performance. Metabolomics, 10 (12) 158
Fiume E, Guyon V, Remoué C, Magnani E, Miquel M, Grain D, Lepiniec L. (2016) TWS1, a Novel Small Protein, Regulates Various Aspects of Seed and Plant Development1[OPEN]. Plant Physiol, 3 (172) 1732-1745
Friggens NC, Duvaux-Ponter C, Etienne MP, Mary-Huard T, Schmidely P. (2016) Characterizing individual differences in animal responses to a nutritional challenge: Toward improved robustness measures. Journal of Dairy Science, 4 (99) 2704-2718
Fustier MA, 2016-06-16 16/06/16, Adaptation locale des téosintes Zea mays ssp. parviglumis et Zea mays ssp. mexicana le long de gradients altitudinaux
Giraud H, 2016-01-22 22/01/16, Genetic analysis of hybrid value for silage maize in multiparental designs : QTL detection and genomic selection
Hazard L, Gauffreteau A, Borg J, Charron MH, Deo M, Enjalbert J, Goutiers V, Gressier E. (2016) Using innovative approaches to meet the challenges of a rapidly changing climate and world: the utility of co-design in plant breeding programmes. Fourrages, 225 39-47
Henry A, Martin OC. (2016) Short relaxation times but long transient times in both simple and complex reaction networks. Journal of the Royal Society, Interface / the Royal Society, 120 (13)
Herve V, Durufle H, San Clemente H, Albenne C, Balliau T, Zivy M, Dunand C, Jamet E. (2016) An enlarged cell wall proteome of Arabidopsis thaliana rosettes. Proteomics, 24 (16) 3183-3187
Hosseini SR, Martin OC, Wagner A. (2016) Phenotypic innovation through recombination in genome-scale metabolic networks. Proceedings. Biological sciences, 1839 (283)
Jacques N, Sarilar V, Urien C, Lopes MR, Morais CG, Uetanabaro AP, Tinsley CR, Rosa CA, Sicard D, Casaregola S. (2016) Three novel ascomycetous yeast species of the Kazachstania clade, Kazachstania saulgeensis sp. nov., Kazachstania serrabonitensis sp. nov. and Kazachstania australis sp. nov. Reassignment of Candida humilis to Kazachstania humilis f.a. comb. nov. and Candida pseudohumilis to Kazachstania pseudohumilis f.a. comb. nov. International journal of systematic and evolutionary microbiology, 12 (66) 5192-5200
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Lhomme E, Urien C, Legrand J, Dousset X, Onno B, Sicard D. (2016) Sourdough microbial community dynamics: An analysis during French organic bread-making processes. Food Microbiology, Pt A (53) 41-50
Martin OC, Krzywicki A, Zagorski M. (2016) Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function. Physics of life reviews, (17) 124-58
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Millet E, Welcker C, Kruijer W, Negro S, Nicolas S, Coupel-Ledru A, Bauland C, Praud S, Ranc N, Presterl T, Tuberosa R, Bedo Z, Draye X, Usadel B, Charcosset A, van Eeuwijk F, Tardieu F. (2016) Genome-wide analysis of yield in Europe: allelic effects as functions of drought and heat scenarios. Plant physiology, 2 (172) 749-764
Moreau L, Charmet G, Charcosset A, Le Gouis J, Deretz S. (2016) Quelle place pour la selection génomique chez les espèces de grande culture ?. ,
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Nguyen-Kim H, San Clemente H, Balliau T, Zivy M, Dunand C, Albenne C, Jamet E. (2016) Arabidopsis thaliana root cell wall proteomics: Increasing the proteome coverage using a combinatorial peptide ligand library and description of unexpected Hyp in peroxidase amino acid sequences. Proteomics, 3 (16) 491-503
Nicolas SD, Peros JP, Lacombe T, Launay A, Le Paslier MC, Berard A, Mangin B, Valiere S, Martins F, Le Cunff L, Laucou V, Bacilieri R, Dereeper A, Chatelet P, This P, Doligez A. (2016) Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies. BMC plant biology, 1 (16) 74
Perronne R, Hannachi M, Lemarié S, Fugeray-Scarbel A, Goldringer I. (2016) L’évolution de la filière blé tendre en France entre 1980 et 2006: quelle influence sur la diversité cultivée ?. Notes et Etudes Socio-Economiques (NESE), (41) 83-113
Reboud X, Sicard D, Bataillon T, Bedhomme S, Dillmann C, Gaba S, Gallet R, Guidot A, Goldringer I, Jasmin JN, Kaltz O, Méry F, Nidelet T, Schneider D, Spor A, Thomas F, Raymond M, Lefevre T. (2016) Évolution expérimentale. , 755-790
Revilla P, Rodriguez VM, Ordas A, Rincent R, Charcosset A, Giauffret C, Melchinger AE, Schon CC, Bauer E, Altmann T, Brunel D, Moreno-Gonzalez J, Campo L, Ouzunova M, Alvarez A, Ruiz de Galarreta JI, Laborde J, Malvar RA. (2016) Association mapping for cold tolerance in two large maize inbred panels. BMC plant biology, 1 (16) 127
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Sabarly V, Aubron C, Glodt J, Balliau T, Langella O, Chevret D, Rigal O, Bourgais A, Picard B, de Vienne D, Denamur E, Bouvet O, Dillmann C. (2016) Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates. Environmental microbiology, 1 (18) 100-17
Solano J, Acuña I, Chauvin JE, Brabant P. (2016) In-Vitro Evaluation of Resistance to Late Blight (Phytophthora infestans Mont. De Bary.) in Solanum Accessions Native to Chile, by Inoculation of Detached Leaflets. Am J Pl Sci, 3 (7) 581-589
Tenaillon MI, Manicacci D, Nicolas SD, Tardieu F, Welcker C. (2016) Testing the link between genome size and growth rate in maize. PeerJ, (4) e2408
Thomas M, Caillon S. (2016) Effects of farmer social status and plant biocultural value on seed circulation networks in Vanuatu. Ecol Soc, 2 (21) 13
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Lanternier F, Barbati E, Meinzer U, Liu L, Pedergnana V, Migaud M, Heritier S, Chomton M, Fremond ML, Gonzales E, Galeotti C, Romana S, Jacquemin E, Angoulvant A, Bidault V, Canioni D, Lachenaud J, Mansouri D, Mahdaviani SA, Adimi P, Mansouri N, Jamshidi M, Bougnoux ME, Abel L, Lortholary O, Blanche S, Casanova JL, Picard C, Puel A. (2015) Inherited CARD9 deficiency in 2 unrelated patients with invasive Exophiala infection. The Journal of infectious diseases, 8 (211) 1241-50
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Obadia T, Silhol R, Opatowski L, Temime L, Legrand J, Thiebaut AC, Herrmann JL, Fleury E, Guillemot D, Boelle PY. (2015) Detailed Contact Data and the Dissemination of Staphylococcus aureus in Hospitals. PLoS computational biology, 3 (11) e1004170
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Thomas M, Verzelen N, Barbillon P, Coomes OT, Caillon S, McKey D, Elias M, Garine E, Raimond C, Dounias E, Jarvis D, Wencélius J, Leclerc C, Labeyrie V, Cuong PH, Hue Ngoc NT, Sthapit B, Rana RB, Barnaud A, Violon C, Arias RE, Latournerie Moreno L, De Santis P, Massol F, Woodward G, Bohan DA. (2015) A Network-Based Method to Detect Patterns of Local Crop Biodiversity: Validation at the Species and Infra-Species Levels. , (53) 259–320
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Thépot S, Restoux G, Goldringer I, Hospital F, Gouache D, Mackay I, Enjalbert J. (2015) Efficiently Tracking Selection in a Multiparental Population: The Case of Earliness in Wheat. Genetics, 2 (199) 609-623
Thépot S, Restoux G, Hospital F, Gouache D, Mackay I, Goldringer I, Enjalbert J, Ogihara Y, Takumi S, Handa H. (2015) Interest of a Multiparental and Outcrossing Wheat Population for Fine Mapping. , 331-8
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